Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq35260 187 2e-42 seq57668 122 7e-23 >seq35260 Length=15809 Score = 187 bits (206), Expect = 2e-42 Identities = 183/236 (78%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| ||| ||||| ||||||||||||||||| ||||| || || Sbjct 10920 ATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAAACATGGTCACTTACAGCAAA 10979 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 | ||| || ||||| || ||||| ||||| | ||| | | ||||| |||||||| ||| Sbjct 10980 GCCCATGGAGTTGTAGTACAGCCTGCATATAGAGACAGGGTAAACATCACTGAGCTGGGA 11039 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||||||| || ||||||||||||||||| |||| |||||||| ||||||| | Sbjct 11040 CTCTGGAACACAAGCATCACCTTCTGGAACACAACCCTGGACGATGAAGGCTGCTACATG 11099 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||| | || || ||||||| ||||||||||| ||||| | || || || ||||| Sbjct 11100 TGTCTCTTCAATACTTTTGTTTCTGGGAAGATCTCAGGGACAGCCTGCCTCACCCT 11155 >seq57668 Length=11521 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 1690 GTGGTGGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 1749 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| || | || | |||| || |||||| Sbjct 1750 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 1809 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 1810 ATCGCCCTGTGGATGACTGA 1829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412706473739440