Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq141308 181 2e-40 seq31296 170 4e-37 seq271237 150 4e-31 seq177860 150 4e-31 seq66926 150 4e-31 seq148632 149 1e-30 seq68848 149 1e-30 seq106596 127 5e-24 seq93163 125 2e-23 seq57751 100 7e-16 seq35487 98.7 2e-15 seq13750 91.5 3e-13 seq25405 89.7 1e-12 seq47344 84.2 5e-11 >seq141308 Length=4330 Score = 181 bits (200), Expect = 2e-40 Identities = 168/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||||||||| |||||||| || || | ||||| | |||||| Sbjct 4276 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 4217 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| || | |||||||||||| Sbjct 4216 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 4157 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||||||| | || ||||| || ||||| ||| Sbjct 4156 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 4097 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| || || | ||||||| Sbjct 4096 TTGCCTGTCAGGGTCTTCACGAAGATCTGCATT 4064 >seq31296 Length=16870 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| | || || ||||| |||||||| ||||||||||| || || | | || Sbjct 14451 ACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGT 14510 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||||||||||| | |||||| || | || || |||||||||| ||| Sbjct 14511 ACGGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGAATTCC 14570 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||| ||||||| || || ||||| || ||||| ||| ||||||||||| Sbjct 14571 TTCCTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACCTCGAG 14630 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || || ||||| || || | |||||| Sbjct 14631 CGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 >seq271237 Length=352 Score = 150 bits (166), Expect = 4e-31 Identities = 171/231 (74%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| | || || ||||| |||||||| ||||||||||| || || | | || Sbjct 2 ACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 61 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||||||||||| || ||||| || | || || |||||||||| ||| Sbjct 62 ACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCC 121 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTT---------CGATGGTGTCAGAGCTTTC 211063 |||||| ||||||||||| || || |||| | ||||| ||| ||| Sbjct 122 TTCCTTATCCTGGATCTTGGCCTTGACATTTTTTTTCTGTCATTTAGTGTCCGAGGGTTC 181 Query 211064 AACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || ||||| || || ||||| || ||||| || || | |||||| Sbjct 182 AACCTCAAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACTAAAATCTGCAT 232 >seq177860 Length=2647 Score = 150 bits (166), Expect = 4e-31 Identities = 168/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGG--GT 210952 ||||||| | || || ||||| |||||||| ||||||||||| || || | | || Sbjct 2584 GAAGTCTCAACACCAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACACTAAGT 2525 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 |||||||||||||||||||| |||||||| || | | || |||||| ||| ||| Sbjct 2524 ATGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTCCTGATCAGGAAGAATTCC 2465 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 | |||| ||||||||||| || || ||||| |||||||| || |||||||| ||| Sbjct 2464 T-CCTTATCCTGGATCTTGGCCTTGACATTTTCTATGGTGTCCAAGGGTTCAACCTTGAG 2406 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || ||||| || || | |||||| Sbjct 2405 TGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 2364 >seq66926 Length=10282 Score = 150 bits (166), Expect = 4e-31 Identities = 125/153 (82%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||||||||| |||||||| || || | ||||| | |||||| Sbjct 10122 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 10181 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| || | |||||||||||| Sbjct 10182 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 10241 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 |||||||| || ||||| |||||||||||| Sbjct 10242 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCA 10274 >seq148632 Length=3950 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| | || || ||||| ||||||| ||||||||||| || || | | || Sbjct 372 ACGAAGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 313 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||||||||||||||||| || ||||| || || || |||||| ||| ||| Sbjct 312 ATGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGACGAATTCC 253 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| || || ||||| || ||||| ||| |||||||||||| Sbjct 252 TTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAG 193 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| || || ||| | || ||||| | || | |||||| Sbjct 192 CATGATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGCAT 151 >seq68848 Length=10048 Score = 149 bits (164), Expect = 1e-30 Identities = 165/217 (76%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| | ||||||||||||| ||||||| || || | ||||||| |||| Sbjct 7281 AGCACCAAGTGCAAAGTGGACTCTTTT-GGATGTTGTAGTCGGACAGGGTCCAGTCATCC 7339 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 | ||||||||||||||| || || || | || |||||||| || | ||||||||||| Sbjct 7340 TACAGCTGCTTGCCTGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 7399 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA--GAGCTTTCAACCTCGAGAGTGATCG 211080 ||||||| || || || |||||||||||| | |||| ||||| |||||||| | Sbjct 7400 TGGATCTCGGCCTTGACATTCTCGATGGTGTCACTGGGCTT--GACCTCAAGAGTGATGG 7457 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||| ||| | || ||||| ||||| | |||||| || Sbjct 7458 TCTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 7494 >seq106596 Length=6504 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||| | || ||||||||||| ||||| || || || | ||||| | ||||| Sbjct 5536 AGAACCAGGAGCAGGGTGGACTCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCT 5477 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| | || |||||||| |||| || | ||||| Sbjct 5476 TCCAGCTGCTTGCCTGCAAAGAT-TCCCTCTGCTGGTCAGGGGGAATGCCCTTTTTGTCT 5418 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || || || ||||| | ||||||||| || ||||| ||| Sbjct 5417 TGGATCTTTGCCTTGACCTTCTCAATAGTGTCTCTGGGTTCAACCTCCAGGGTGATGGTC 5358 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || |||| | ||| | |||||| Sbjct 5357 TTGCCTGTCAGGGTCTGCATAAAGATCTGCAT 5326 >seq93163 Length=7565 Score = 125 bits (138), Expect = 2e-23 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||||||||| |||||| | ||||| | || || |||||| Sbjct 7023 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCAGAGAGAGTGTGGCCATCT 7082 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA---CTCCTTCCTTG 211019 |||||||||||||| | ||||| || | || ||||| | || | || || ||| Sbjct 7083 TCCAGCTGCTTGCCCACAAAGATGAGTGGCTGCTGGTCGCGGGGCAGGGTGCCCTCTTTG 7142 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 ||||||||||| || || || || ||||||||| | || ||||| || ||||| Sbjct 7143 TCCTGGATCTTGGCCTTAACATTCTCTATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 7202 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || || ||||| || || | |||||||| Sbjct 7203 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 7240 >seq57751 Length=11510 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||| ||||| || |||| | ||| | ||| || ||| || Sbjct 10682 AGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTCGTGATCAGAAAGAGTGTAACCACCT 10741 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||| |||||||||||| ||||| | ||||||||||| || | || || || ||| Sbjct 10742 TCCGACTGCTTGCCTGCAAAGATTTGCTTCTGTTGGTCAGGGGGTATGCCCTCTTTATCC 10801 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || |||| || | | || ||||| || || || ||| Sbjct 10802 TGAATCTTGACCTTCACATTCTCAATGGCGTTACTGGGCTCCACCTCTAGGGTAATGGTC 10861 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || | ||||| ||||| | |||||||| Sbjct 10862 TTGTGGGTCTGGGTCTTCACAAAGATTTGCATTTT 10896 >seq35487 Length=15755 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 |||||| | ||| | ||||| || ||||| ||||| ||||| || || ||| | Sbjct 15509 GAAGTCCCAACACAGGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCA--AAGTATGG 15452 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 |||||||||||||||| || || | | || | | | |||||||||| ||| | Sbjct 15451 ---CATCTTCCAGCTGCTTACCAGCAAGAAGCAGCCTTAGCCAATCAGGAGGAATTCCCT 15395 Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGT-TTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||| |||||||||| ||| || | |||| || | || ||| ||||||||| || Sbjct 15394 CCTAAACCTGGATCTTGGTTTTTACATCTTTCTATAGCATCTGAGGGTTCAACCTCAAGG 15335 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| ||| | || ||||||| || | |||||| || Sbjct 15334 GTGATGGTCTTCCCCATAAGGGTCTTTATGAAAATCTGCATGTT 15291 >seq13750 Length=24615 Score = 91.5 bits (100), Expect = 3e-13 Identities = 154/222 (69%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 |||| ||||| |||| || ||||| ||||| |||||||| || | | ||| | Sbjct 22243 AGTCAGAGGACCAGGTACAGGGTGGATTCTTTCTGGATGTTGTATTTAGAAAGAGCGTGG 22302 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACT-CCTTC 211015 ||||||| |||||||||| | | ||||| | | || |||| || ||| | || || Sbjct 22303 CCATCTTGCAGCTGCTTGTCCTCCAAGATGGGTTGCTGCTGGTGTGGGGGAGGTGCCCTC 22362 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||||| |||||| || || || |||||||||||| | || |||| || || Sbjct 22363 TTTGTCCTAGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTTCAGGGT 22422 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| ||||| | || | ||||| || || | ||| |||| Sbjct 22423 GATGGTCTTGCTGGTCAAGGTCTTCACGAAGATTTGCGTTTT 22464 >seq25405 Length=23031 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||| |||||||| || || || |||||||||||| | || ||||| Sbjct 16450 CCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCA 16391 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| ||||| ||||| || ||||| ||||| | |||||| || Sbjct 16390 AGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTT 16344 >seq47344 Length=22623 Score = 84.2 bits (92), Expect = 5e-11 Identities = 145/209 (69%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||| | ||||| || ||||| |||| ||||| || || ||| | |||||||| Sbjct 12063 ACAGGATGAAGGGTAGACTCCTTTTCAATGTTGTAGTCA--AAGTATGG---CATCTTCC 12117 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 |||||||| || || | | || | | | |||||||||| ||| | || ||||| Sbjct 12118 AGCTGCTTACCAGCAAGAAGCAGCCTTAGCCAATCAGGAGGAATTCCCTTTTTAACCTGG 12177 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || |||||| ||||| | | || ||| |||| |||| || ||||| ||||| Sbjct 12178 ATTTTGGTTTTCACATTTTCTTTAGCATCTGAGGGTTCAGCCTCAAGGGTGATAGTCTTC 12237 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | | | || ||||||||||| | ||| || Sbjct 12238 CTCATAAGGGTCTTTACAAAAATCTGTAT 12266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153947095997900