Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq31296 104 2e-17 seq148632 93.3 3e-14 seq141308 87.8 1e-12 seq177860 82.4 5e-11 >seq31296 Length=16870 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || ||||| ||||| ||||| ||||| || | Sbjct 14672 ATGCAGATTTTCGTGAAGACCCTTACAGGGAAAACCATCACGCTCGAGGTTGAGCCCTCA 14613 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || || || || || ||||| | || || ||||| Sbjct 14612 GACACTATAGAAAATGTCAAGGCCAAGATCCGGGATAAGGAAGGAATTCCTCCTGATCAG 14553 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || | ||||| || |||||||| | || ||||| || |||||| Sbjct 14552 CAGAGGCTGATCTTCCCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGCCTGACTACAAC 14493 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| |||||||| | ||| | || || || Sbjct 14492 ATCCAAAAGGAGTCCACCCTTCATCTGGTGTTGAG 14458 >seq148632 Length=3950 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||| | || ||||| | ||| ||||| |||| ||||| ||||| || | Sbjct 151 ATGCAGATTTTCATGAAGACCCTTATGGGGAAAACCATCATGCTCGAGGTTGAACCCTCA 210 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || || || || || ||||| | | || ||||| Sbjct 211 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCGTCCTGATCAG 270 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || ||||| ||||| || |||||||| || | ||||| || |||||| Sbjct 271 CAGAAGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGACCATACTTTGTCTGACTACAAC 330 Query 23791 ATACAAAAAGAGTCCA 23806 || ||||| ||||||| Sbjct 331 ATCCAAAAGGAGTCCA 346 >seq141308 Length=4330 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 4064 AATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 4123 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||||| ||||| | || || || || Sbjct 4124 TGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 4183 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || |||||||| | ||||| | ||| ||||| Sbjct 4184 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 4243 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 4244 CATCCAGAAAGAGTCCAC 4261 >seq177860 Length=2647 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/218 (69%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| ||||| ||||| ||||| ||| | ||||| || | Sbjct 2364 ATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTTG 2423 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | | |||| | || | || | | | | ||| ||| | | || ||||| Sbjct 2424 GACACCATAGAAAATGTCAAGGCCAAGA--TCCAGGATAAGGAGGAATTCTTCCTGATCA 2481 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTT--TAGGCGATTAC 23787 || | | || || || ||||| || |||||||| | | |||| | || ||| Sbjct 2482 GGAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCATACTTAGTGTCTGACTAC 2541 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| ||||||||| | ||| | || || || Sbjct 2542 AACATCCAAAAGGAGTCCACACTTCATCTGGTGTTGAG 2579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336565882833680