Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq31296 140 8e-28 seq141308 134 3e-26 seq148632 125 2e-23 seq36148 118 3e-21 seq271237 116 9e-21 seq66926 114 3e-20 seq177860 111 4e-19 seq38399 104 6e-17 seq212160 100 7e-16 seq251966 98.7 2e-15 seq106596 96.9 8e-15 seq68848 96.9 8e-15 seq229498 91.5 3e-13 seq337516 87.8 4e-12 seq287879 87.8 4e-12 seq93144 86.0 1e-11 seq13750 86.0 1e-11 >seq31296 Length=16870 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || || || || ||||| || ||||||| ||||| || | |||||| Sbjct 14451 ACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGT 14510 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| |||| |||||| || | || || || || ||||| || Sbjct 14511 ACGGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGAATTCC 14570 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || ||||||| ||| ||| ||| || |||||||||| || || || | Sbjct 14571 TTCCTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACCTCGAG 14630 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || || || || | || || | ||| | ||||| Sbjct 14631 CGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 >seq141308 Length=4330 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| ||||| |||| ||||| |||| || || | ||||| Sbjct 4277 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 4218 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || || || ||||||||||| Sbjct 4217 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 4158 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || ||||||||||| || || || || | ||||| || Sbjct 4157 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGT 4098 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| |||| || || | ||| | |||||| Sbjct 4097 CTTGCCTGTCAGGGTCTTCACGAAGATCTGCATT 4064 >seq148632 Length=3950 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || || || || |||| || ||||||| ||||| || | |||||| Sbjct 372 ACGAAGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 313 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||||||| |||||||| ||||| ||||| || || || || || |||| || Sbjct 312 ATGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGACGAATTCC 253 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| ||| ||| || |||||||||| ||| || || | Sbjct 252 TTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAG 193 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | |||| || || ||| | | || || ||||| | ||||| Sbjct 192 CATGATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGCAT 151 >seq36148 Length=15585 Score = 118 bits (130), Expect = 3e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 |||||||| | | || || || || |||||||| ||||||||| | |||||||| | Sbjct 154 TACAACGTGGTCGTCACAGCCCACGCATTTGTTATAATTTTCTTTATAGTTATGCCAATA 213 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 || || ||||| ||||| || ||||| ||||| | || ||||| || || || ||||| Sbjct 214 ATAATTGGCGGCTTCGGTAACTGATTAGTTCCACTTATAATTGGGGCCCCCGACATGGCA 273 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || ||| | | ||||||||||| || ||| | ||||| || ||||| |||| Sbjct 274 TTCCCACGAATAAACAATATAAGCTTCTGACTCCTACCCCCATCCTTCCTTCT 326 >seq271237 Length=352 Score = 116 bits (128), Expect = 9e-21 Identities = 149/207 (72%), Gaps = 9/207 (4%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || || || || ||||| || ||||||| ||||| || | |||||| Sbjct 2 ACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 61 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||| ||||| || | || || || || ||||| || Sbjct 62 ACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCC 121 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTT---------CGATGGTGTCTGAGGTTTC 225662 |||||| || |||||||| ||| ||| || | ||||| |||| ||| Sbjct 122 TTCCTTATCCTGGATCTTGGCCTTGACATTTTTTTTCTGTCATTTAGTGTCCGAGGGTTC 181 Query 225663 CACGTCTAACGTGATCGTCTTGCCCGT 225689 || || | |||||| || || ||||| Sbjct 182 AACCTCAAGCGTGATGGTTTTCCCCGT 208 >seq66926 Length=10282 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| ||||| |||| ||||| |||| || || | ||||| Sbjct 10121 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 10180 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || || || ||||||||||| Sbjct 10181 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 10240 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| ||| || ||||||||||| Sbjct 10241 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTC 10273 >seq177860 Length=2647 Score = 111 bits (122), Expect = 4e-19 Identities = 159/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCA--AAGT 225551 ||||||||| || || || || ||||| || ||||||| ||||| || | || |||| Sbjct 2584 GAAGTCTCAACACCAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACACTAAGT 2525 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 |||||||| |||||||| ||||||||||| || | | || || || |||| || Sbjct 2524 ATGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTCCTGATCAGGAAGAATTCC 2465 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || |||||||| ||| ||| ||| |||||||| ||| ||| || | | Sbjct 2464 -TCCTTATCCTGGATCTTGGCCTTGACATTTTCTATGGTGTCCAAGGGTTCAACCTTGAG 2406 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || ||||| | || || | ||| | ||||| Sbjct 2405 TGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 2364 >seq38399 Length=15059 Score = 104 bits (114), Expect = 6e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 7570 ATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGT 7629 || || || ||||| || ||||| ||||||||| | |||||||| | || || ||||| Sbjct 13484 ATCACAGCCCATGCATTCGTTATAATTTTCTTTATAGTTATGCCAATAATAATTGGCGGC 13543 Query 7630 TTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTT 7689 ||||| || ||||| ||||| | || ||||| || || | ||||| || ||| | | Sbjct 13544 TTCGGTAACTGATTAGTTCCACTTATAATTGGGGCCCCCAACATGGCATTCCCACGAATA 13603 Query 7690 AACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 ||||||||||| || ||| | || || || ||||| Sbjct 13604 AACAATATAAGCTTCTGACTTCTGCCCCCATCCTT 13638 >seq212160 Length=1493 Score = 100 bits (110), Expect = 7e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 |||||||| || | || || || || |||||||| ||||||||| | || ||||| | Sbjct 272 TACAACGTGATCGTCACAGCCCACGCATTTGTTATAATTTTCTTTATAGTAATGCCAATA 331 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 || || ||| | ||||| || ||||| || || | || ||||| ||| |||| || || Sbjct 332 ATAATTGGCAGCTTCGGTAACTGATTAGTCCCACTTATAATTGGAGCTTCTGACATAGCA 391 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || ||| | | ||||||||||| || ||| | || || || || || |||| Sbjct 392 TTCCCACGAATAAACAATATAAGCTTCTGACTTCTGCCCCCATCATTTCTTCT 444 >seq251966 Length=647 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 ||||| || || | || || ||||| || ||||| ||||||||| | || ||||| | Sbjct 243 TACAATGTAATCGTCACAGCCCATGCATTCGTTATAATTTTCTTTATAGTCATGCCAATA 184 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 || || ||||| ||||| || ||| | ||||| | || ||||| |||||||| || || Sbjct 183 ATAATCGGCGGCTTCGGTAACTGACTAGTTCCACTTATAATTGGAGCTCCTGACATAGCA 124 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || | | | | ||||||||||| || ||| | || || || || || Sbjct 123 TTCCTATGAATAAACAATATAAGCTTCTGACTCCTGCCCCCATCATT 77 >seq106596 Length=6504 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||| | || ||||| ||||| |||| ||||| || | || || | ||||| Sbjct 5536 AGAACCAGGAGCAGGGTGGACTCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCT 5477 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| | || ||||| || ||||| || | |||||| Sbjct 5476 TCCAGCTGCTTGCCTGCAAAGATTCC-CTCTGCTGGTCAGGGGGAATGCCCTTTTTGTCT 5418 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| || || || |||||| || ||| || || | ||||| ||| Sbjct 5417 TGGATCTTTGCCTTGACCTTCTCAATAGTGTCTCTGGGTTCAACCTCCAGGGTGATGGTC 5358 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 5357 TTGCCTGTCA 5348 >seq68848 Length=10048 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| | |||||| |||||| ||| ||||| |||| || || | |||| Sbjct 7281 AGCACCAAGTGCAAAGTGGACTCTTTT-GGATGTTGTAGTCGGACAGGGTCCAGTCATCC 7339 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 | |||||||| || || || || || | || ||||| || || || |||||||||||| Sbjct 7340 TACAGCTGCTTGCCTGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 7399 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||| ||| ||| ||||||||||| || | || || | ||||| ||| Sbjct 7400 TGGATCTCGGCCTTGACATTCTCGATGGTGTCACTGGGCTTGACCTCAAGAGTGATGGTC 7459 Query 225682 TTGCCCGTCA 225691 |||||| ||| Sbjct 7460 TTGCCCATCA 7469 >seq229498 Length=1062 Score = 91.5 bits (100), Expect = 3e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 |||||||| || | || || || | || ||||| ||||||||| | || ||||| | Sbjct 201 TACAACGTGATCGTCACAGCCCACACATTCGTTATAATTTTCTTTATAGTAATGCCAATA 260 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 || || ||||| ||| | || ||| | ||||| | || ||||| |||||||| || || Sbjct 261 ATAATTGGCGGCTTCTGTAACTGACTAGTTCCACTTATAATTGGAGCTCCTGACATAGCA 320 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGA 7707 || ||| | | ||||||||||| || ||| Sbjct 321 TTCCCACGAATAAACAATATAAGCTTCTGA 350 >seq337516 Length=207 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 7573 ACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTC 7632 || || || || || |||| ||||||||| | || ||||| | || || ||||| ||| Sbjct 207 ACAGCCCACGCATTCATTATAATTTTCTTTATAGTCATGCCAATAATAATTGGCGGCTTC 148 Query 7633 GGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAAC 7692 || || ||| | ||||| | || ||||| |||||||| | || || ||| | | ||| Sbjct 147 GGCAACTGACTAGTTCCACTTATAATTGGAGCTCCTGACACAGCCTTCCCACGAATAAAC 88 Query 7693 AATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 |||||||| || ||| | || || || || || |||| Sbjct 87 AATATAAGCTTCTGAGTCCTGCCCCCATCATTTCTTCT 50 >seq287879 Length=275 Score = 87.8 bits (96), Expect = 4e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 |||||||| || | || || || || || ||||| ||||||||| | || ||||| | Sbjct 88 TACAACGTGATCGTCACAGCCCACGCATTCGTTATAATTTTCTTTATAGTCATGCCAATA 147 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 || || || || ||| | || ||| | ||||| | || ||||| |||||||| | | Sbjct 148 ATAATTGGTGGCTTCAGTAACTGACTAGTTCCACTTATAATTGGAGCTCCTGACACAGGC 207 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || ||| | | ||||||||||| || ||| | || || || || || |||| Sbjct 208 TTCCCACGAATAAACAATATAAGCTTCTGACTCCTGCCCCCATCATTCCTTCT 260 >seq93144 Length=10911 Score = 86.0 bits (94), Expect = 1e-11 Identities = 88/114 (77%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 5019 CTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGT 5078 ||||| || || || || ||| | || || || ||||| ||||||||||||||||| Sbjct 5027 CTTCAGTATCTGGCTCCGTACTCTGGCTGCTCCATGGGAGAGTATTTTAGAGATAATGGC 4968 Query 5079 AAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAACGTATAGTCT 5132 || |||||||| ||||||||||| |||||| ||||| |||| | || |||| Sbjct 4967 AAGCATGCTTTGATCATCTACGACGATTTATCCAAACAGGTCAAAGGAT-GTCT 4915 >seq13750 Length=24615 Score = 86.0 bits (94), Expect = 1e-11 Identities = 153/222 (69%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||| ||||| |||| || ||||||||||| |||| ||||| | | | || Sbjct 22243 AGTCAGAGGACCAGGTACAGGGTGGATTCTTTCTGGATGTTGTATTTAGAAAGAGCGTGG 22302 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAA-TACCTTC 225614 ||||||| |||||||| | | ||||| || | || |||| || ||| | || || Sbjct 22303 CCATCTTGCAGCTGCTTGTCCTCCAAGATGGGTTGCTGCTGGTGTGGGGGAGGTGCCCTC 22362 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||| | |||||| ||| ||| ||||||||||| || ||||| | | || Sbjct 22363 TTTGTCCTAGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTTCAGGGT 22422 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||| ||||||| ||||| || || | ||| | |||| |||| Sbjct 22423 GATGGTCTTGCTGGTCAAGGTCTTCACGAAGATTTGCGTTTT 22464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1187176414419240