Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq11430 140 3e-28 seq1257 87.8 1e-12 >seq11430 Length=26483 Score = 140 bits (154), Expect = 3e-28 Identities = 132/166 (80%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| || |||| ||| || |||| ||| ||||| || | |||||||| ||||| ||||| Sbjct 7535 TAGGCCTGTGATGTGTGCAATCACGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGG 7594 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC-GTCGC 29831 ||| || || ||||| || ||||||||||||||||||||||| || ||||| || |||| Sbjct 7595 CACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGC 7654 Query 29832 TCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 | || || || ||||| | ||| ||||| ||||| || ||||| || Sbjct 7655 T-ACATAGAATTGACAGAGGGCGTGGCAAGGAGGCAGTGCCATCAG 7699 >seq1257 Length=62205 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||| |||||||| |||| || | |||||| | | ||||| |||||| || || Sbjct 31892 TTGAGCTCTCTGCTGAGAACTATATTGATTCTGTCTTTTAAAGGTCGATTCTTCTCAGGA 31951 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || | ||||| ||||| | |||||| |||||| Sbjct 31952 ATGGAGAACCAGGTTTTCCGGCCCATAATCACAAGGTTCTGTTTACCT 31999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404428383047560