Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq36452 125 6e-24 seq172906 120 3e-22 seq152803 98.7 8e-16 seq125977 95.1 1e-14 seq100203 93.3 4e-14 seq55738 89.7 4e-13 >seq36452 Length=40126 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||| || ||||| || || | ||||| |||||||| ||| || ||||| | | Sbjct 26673 GTGAAAACAGACATTCAGATCACTGTTCCTTCTGGGTGCTATGGAAGAGTAGCTTCACGG 26732 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| |||||||| || ||||| || || || || || ||||| ||||| ||| ||| Sbjct 26733 TCTGGCTTGGCAGTAAAGCACTTCATAGATGTAGGAGCCGGTGTCATAGACGAAGATTAT 26792 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTA-TAAAAAA 31950 |||||||| |||| ||||| ||||||| |||||| ||| | | | | ||||||| Sbjct 26793 AGAGGAAATATTGGTGTTGTGCTGTTTAACTTTGGA-AAAGAGAAGTTTGAAGTAAAAAA 26851 Query 31951 GGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 || ||| || | || || || ||||| ||| Sbjct 26852 AGGTGATCGGATTGCACAGCTCATTTGTGAA 26882 >seq172906 Length=2851 Score = 120 bits (132), Expect = 3e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| || ||||| ||||||||||| || || || | ||||||||| | |||||||| | Sbjct 1441 CTTCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1382 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||| || ||||| |||||||||||||| ||||| | |||||| ||||| ||||| | Sbjct 1381 TCAGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGG 1322 Query 4690 CTAC 4693 | || Sbjct 1321 CCAC 1318 >seq152803 Length=3745 Score = 98.7 bits (108), Expect = 8e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 |||||||| || |||||||| || |||||||| ||||| ||||| |||||||| |||||| Sbjct 1609 TGGTATTCAGAAACTCGCTTCTCAAAGAAATTCGTTTTCCCTTCCAACGAAATGTTTTCC 1668 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 1669 ATAAAATCAAAGGGATT 1685 >seq125977 Length=8618 Score = 95.1 bits (104), Expect = 1e-14 Identities = 183/265 (69%), Gaps = 10/265 (4%) Strand=Plus/Minus Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||| ||||| || |||||||| || ||| | || Sbjct 4826 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCC 4767 Query 4692 ACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGC 4750 || | ||| || | | ||| ||||||| |||||| | |||||| || Sbjct 4766 ACAACTCGTTCTCCATAGGTAGCCT-CTTTGTCCCCAATCCAACACAGGGCCCAGACGGC 4708 Query 4751 TTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTCAAA 4807 || || || || | || ||||| | ||||| || || | ||| || | || Sbjct 4707 CTTCTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTT---- 4652 Query 4808 TGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTA 4866 ||| |||| ||| |||||||| || || || || ||||||||||||||||| ||||| | Sbjct 4651 TGGAATCTTTAATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCA 4592 Query 4867 TAGCAATCTGAAATCCGTAAAAGCA 4891 | ||||| || || || || || || Sbjct 4591 TGGCAATTTGGAAGCCATAGAAACA 4567 >seq100203 Length=6979 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/130 (76%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || |||||||| || || || || ||||||||||||||||| || || | Sbjct 1299 AAAATCTT---ACCAAGTTTTCATTGACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 1355 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 || || ||||| |||| ||||| | |||||| || ||||||||||| | || || | Sbjct 1356 TGTGGGAGATAAAATACTTCTCGTCTGACTTAAGCTTGTTCCAGTGGGGGAGGTCCTTTG 1415 Query 5041 TTAAATCAAC 5050 || ||||| Sbjct 1416 ACAAGTCAAC 1425 >seq55738 Length=16555 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || || ||||||||||||||||| ||||| || ||| Sbjct 7855 TCTTTAATGTAAGTGTCAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCA 7796 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | || ||||| || |||||||| Sbjct 7795 ATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTC 7752 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997 ||||| || ||||| || ||||| || ||||| || |||| || ||||||||||| | Sbjct 6658 TTTTCATTGACTATGCCATCACTCGCCGCAAAGAATGCCAGGACGTGAGATATAAAATGT 6599 Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCA 5057 ||||| || || || || |||||| | | ||| || | | || || || ||| Sbjct 6598 CTCTCGTCCGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCTCCTCA 6539 Query 5058 ACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATC 5117 | ||||| || || || || ||||| |||||||| ||| |||||| | || | || Sbjct 6538 GCCGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGATG 6479 Query 5118 GGAA 5121 |||| Sbjct 6478 GGAA 6475 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| || || || ||||| || | || ||||| | || | || || Sbjct 9265 TCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 9206 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||| ||||| || |||||||| || ||||| || Sbjct 9205 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGCC 9146 Query 4692 ACTAATCG 4699 || | ||| Sbjct 9145 ACAACTCG 9138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425225572403180