Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq36452 114 2e-20 seq42668 111 2e-19 seq18550 107 3e-18 >seq36452 Length=40126 Score = 114 bits (126), Expect = 2e-20 Identities = 232/332 (70%), Gaps = 22/332 (7%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| | || ||| ||||| || |||||||| ||| || | || ||||| Sbjct 26960 TCCAGTGGAGCAGAAACCTCCTGAGC-TC-CTTTCAGTGTTATCCAGTGTTTCAACTTC- 26904 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | || || |||||| | || |||| | | || || || || || | |||||| | ||| Sbjct 26903 -TAAG-TCTGGATAAAAAATTCGTTCACAAATGAGCTGTGCAATCCGATCACCTTTTTTT 26846 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||||||| || | ||| | || ||||| | |||||||||||| Sbjct 26845 ACTTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAATATTTCCTCTATAATCT 26786 Query 46054 TCATCTATTACTCCCCCTCCCACATCGAT-ACCT--TTTAGAGACAGTCCAGATCTAGGA 46110 || ||||| || || |||| ||||| || | | |||| | || ||||| | | | Sbjct 26785 TCGTCTATGACACCGGCTCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCGTGAA 26726 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 |||| ||||||||| ||||| || | || ||| |||| |||||||| | ||| Sbjct 26725 GCTACTCTTCCATAGCACCCAGAA----GGAACAGTGATCTGAATGTCTGTTTTCA-CAA 26671 Query 46167 TCTCCTTTCTCCA--GGAGGGATAGTATAGTC 46196 | ||||||||| || || || ||||| || Sbjct 26670 T-GGCTTTCTCCATGGGTGGTATTGTATAATC 26640 >seq42668 Length=14146 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| ||||| ||||| |||||| ||| | || || || || || || | Sbjct 540 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 481 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| ||||||||||||||||| ||||| ||||| ||||| || | || |||| Sbjct 480 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCAGCCATCTTGAGAACAGTCT 421 Query 76969 TTTGAGGAATTTCCCA 76984 | |||| |||||||| Sbjct 420 TCTGAGAGATTTCCCA 405 >seq18550 Length=27441 Score = 107 bits (118), Expect = 3e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 ||||||| ||| || | || || ||||| || | || ||||| ||||| |||||| Sbjct 14355 CTAGACAGTTGTGGACGGTTGGTCCCGGCATTGAAGAGAGTTGGAGAGGCATGAGTAAAC 14414 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 || || |||||||| || ||||| |||||||| || | || || || || ||||| Sbjct 14415 CACTTCTCAGAAAGCAGGTTGTACGTTTCAATTGCAGCGTCGATATCTTCTTTGTGAATC 14474 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACC 78539 || || | ||| | ||||||||||||||| ||||||||| || Sbjct 14475 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCAGCC 14516 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| || || || ||||| || |||||||| || || || | || Sbjct 2466 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 2525 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||| ||||| || |||||||| ||||| || || | | |||||| Sbjct 2526 TCATTATTCCCCAGAATCTGAGCGGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 2585 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 2586 TTTCTTATACCAT 2598 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| ||||||||||| ||||||| ||||| || |||||||| |||||||||||| Sbjct 8386 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 8445 Query 77985 CAGTC 77989 ||||| Sbjct 8446 CAGTC 8450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691625629654400