Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq125977 134 2e-26 seq55738 116 5e-21 seq42668 111 2e-19 seq18550 109 8e-19 seq112998 98.7 1e-15 seq36452 86.0 9e-12 >seq125977 Length=8618 Score = 134 bits (148), Expect = 2e-26 Identities = 186/260 (72%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||| ||||| || ||||||||||| || | || Sbjct 4826 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCC 4767 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCCACCTTTGAGCCCAATCAGCC 46830 |||| || ||||| || | || || || | |||||| | | ||||| | ||| Sbjct 4766 ACAACTCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACACAGGGCCCAGACGGCC 4707 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTA 46890 || || || ||| |||||||||| || |||||||| |||||| | | | || | | Sbjct 4706 TTCTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAA 4647 Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 ||||||| || || || || | || || |||||||| ||||| |||||||| || || Sbjct 4646 TCTTTAATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCATGGCA 4587 Query 46951 ATCTGAAATCCGTAAAAACA 46970 || || || || || ||||| Sbjct 4586 ATTTGGAAGCCATAGAAACA 4567 >seq55738 Length=16555 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | || || |||||||| || |||||||| ||||| || || ||| Sbjct 9265 TCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 9206 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||| ||||| || ||||||||||| || || || Sbjct 9205 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGCC 9146 Query 46774 ACAAGTCTCTCTCC 46787 |||| || ||||| Sbjct 9145 ACAACTCGTTCTCC 9132 >seq42668 Length=14146 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| ||||| ||||| |||||| ||| | || || || || || || | Sbjct 540 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 481 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| ||||||||||||||||| ||||| ||||| ||||| || | || |||| Sbjct 480 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCAGCCATCTTGAGAACAGTCT 421 Query 75564 TTTGAGGAATTTCCCA 75579 | |||| |||||||| Sbjct 420 TCTGAGAGATTTCCCA 405 >seq18550 Length=27441 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| || || || ||||| || |||||||| || || || | || Sbjct 2466 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 2525 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| ||| ||||| ||||||||||| ||||| || || | | |||||| Sbjct 2526 TCATTATTCCCCAGAATCTGAGCGGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 2585 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 2586 TTTCTTATACCAT 2598 Score = 105 bits (116), Expect = 9e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 ||||||| ||| || | || || ||||| || | || ||||| |||||||| ||| Sbjct 14355 CTAGACAGTTGTGGACGGTTGGTCCCGGCATTGAAGAGAGTTGGAGAGGCATGAGTAAAC 14414 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 || || |||||||| || ||||| |||||||| | || || ||||| || ||||| Sbjct 14415 CACTTCTCAGAAAGCAGGTTGTACGTTTCAATTGCAGCGTCGATATCTTCTTTGTGAATC 14474 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTC 77130 || |||| || | ||||||||||||||| |||| ||| Sbjct 14475 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTC 14512 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || |||| || Sbjct 19227 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGATG 19286 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | |||||| |||| || ||| | || || || | |||||| | | Sbjct 19287 GCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCAGT 19346 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || ||||| | || || ||||| || |||||||||| Sbjct 19347 TCCACTGTGGTGACTCCACTGTACAGGCCTTGGATTACTTTCATGG 19392 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||||||| |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||| Sbjct 8376 ATATAACTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 8435 Query 76570 CATCAATGACCACTC 76584 |||||||||||| || Sbjct 8436 CATCAATGACCAGTC 8450 >seq112998 Length=9533 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| || |||||||| ||||||| ||||| ||||||||| ||||| |||||| | Sbjct 7555 TACCTCTTCTGCGGTCCAGAAAGACGCCTGTGCTTGTTTATACATCTTCCAAATATCAGG 7496 Query 47187 ATATTGGATCGGAAAAATAACAAA 47210 || ||||||||||| |||||||| Sbjct 7495 GTACTGGATCGGAAAGATAACAAA 7472 >seq36452 Length=40126 Score = 86.0 bits (94), Expect = 9e-12 Identities = 186/272 (68%), Gaps = 15/272 (6%) Strand=Plus/Minus Query 44421 TCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTATTT 44480 |||| || |||||| | || |||| | | || || || || || | ||||||| | ||| Sbjct 26905 TCTAAGTCTGGATAAAAAATTCGTTCACAAATGAGCTGTGCAATCCGATCACCTTTTTTT 26846 Query 44481 ATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAATCT 44540 | || ||| | ||||||||| || | || | || ||||| || || ||||||||| Sbjct 26845 ACTTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAATATTTCCTCTATAATCT 26786 Query 44541 TCATCTATTACTCCACCTCCCACATCAAT-ACCT--TTTAGAGAAAGACCCGATCTAGGC 44597 || ||||| || || |||| ||||| || | | |||| | | || || | | Sbjct 26785 TCGTCTATGACACCGGCTCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCGTGAA 26726 Query 44598 GCTATTCTTCCATA----ACAGAATTTTGGCATAGACATACGAATATCTGTTTTAATCAA 44653 |||| ||||||||| ||||| || | || || |||| |||||||| | ||| Sbjct 26725 GCTACTCTTCCATAGCACCCAGAA----GGAACAGTGATCTGAATGTCTGTTTTCA-CAA 26671 Query 44654 CCGTCTTTCTCCA--GGAGGGATAGTATAATC 44683 | ||||||||| || || || |||||||| Sbjct 26670 -TGGCTTTCTCCATGGGTGGTATTGTATAATC 26640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709811212627200