Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq31296 132 1e-25 seq141308 129 1e-24 seq271237 105 2e-17 seq148632 104 5e-17 seq177860 102 2e-16 seq68848 100 7e-16 seq66926 95.1 3e-14 seq93163 91.5 3e-13 >seq31296 Length=16870 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || |||||||| || ||||| |||||||||||||| || | ||||| | Sbjct 14455 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGTACGG 14514 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || | |||||| ||||||||||| || | | ||||||||| Sbjct 14515 CCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 14574 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || | || || |||||| | |||| ||||||| ||| || || || || Sbjct 14575 TTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACCTCGAGCGTG 14634 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || ||||||||||| | |||||| Sbjct 14635 ATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 >seq141308 Length=4330 Score = 129 bits (142), Expect = 1e-24 Identities = 165/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||| || || || || |||||||| ||||||||||| |||| | || Sbjct 4286 CCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGT 4227 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 4226 GCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 4167 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || ||||| |||| | | |||| ||| ||| || || Sbjct 4166 TTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCGACCTC 4110 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || ||||| || || ||||||||||||| ||||||| Sbjct 4109 CAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATT 4064 >seq271237 Length=352 Score = 105 bits (116), Expect = 2e-17 Identities = 160/228 (70%), Gaps = 11/228 (5%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || |||||||| || ||||| |||||||||||||| || | ||||| | Sbjct 6 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 65 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| ||||||||||| || | | ||||||||| Sbjct 66 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 125 Query 152007 TTTTCTTGAATTTT----------TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTAC 152056 || || || || || || ||| | ||| | | |||| || || || Sbjct 126 TTATCCTGGATCTTGGCCTTGACATTTTTTTTCTGTCATTTAG-TGTCCGAGGGTTCAAC 184 Query 152057 TTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| ||||| || |||||||| || | |||||| Sbjct 185 CTCAAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACTAAAATCTGCAT 232 >seq148632 Length=3950 Score = 104 bits (114), Expect = 5e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || |||||||| | ||||| |||||||||||||| || | ||||| Sbjct 368 AGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGG 309 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGC-CGAGATTCCTTC 152005 ||||||| || || || || ||||| ||| ||||||| || | ||| |||||||| Sbjct 308 TCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGACGA-ATTCCTTC 250 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || |||||| | |||| ||||||| || || || || | Sbjct 249 CTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCAT 190 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||| | || ||||||| ||| | |||||| Sbjct 189 GATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGCAT 151 >seq177860 Length=2647 Score = 102 bits (112), Expect = 2e-16 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTA--AAGTTC 151944 ||||| | || |||||||| || ||||| |||||||||||||| || | | |||| Sbjct 2582 AGTCTCAACACCAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACACTAAGTAT 2523 Query 151945 TCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| || || || |||||||| ||||||| ||| || | ||| | | | Sbjct 2522 GGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTCCTGATCAG-GAAGAATTCCT 2464 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || || || || |||||| | |||| | |||| | || || | || | Sbjct 2463 CCTTATCCTGGATCTTGGCCTTGACATTTTCTATGGTGTCCAAGGGTTCAACCTTGAGTG 2404 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| ||||| || ||||||||||| | |||||| Sbjct 2403 TGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 2364 >seq68848 Length=10048 Score = 100 bits (110), Expect = 7e-16 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| ||||||||| |||||||||| |||| | || | |||| | | Sbjct 7286 CAAG-TGCAAAGTGGACTCTTTT-GGATGTTGTAGTCGGACAGGGTCCAGTCATCCTACA 7343 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || || || |||||||||||||| | | ||| |||||||| ||||| | Sbjct 7344 GCTGCTTGCCTGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGA 7403 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | | |||||| |||| | | |||| ||| || || |||||||| || || | Sbjct 7404 TCTCGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTTGACCTCAAGAGTGATGGTCT 7460 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| | || |||||||| |||| |||||| || Sbjct 7461 TGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 7494 >seq66926 Length=10282 Score = 95.1 bits (104), Expect = 3e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||| || || || || |||||||| ||||||||||| |||| | || Sbjct 10112 CCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGT 10171 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 10172 GCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 10231 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044 |||||| || || || || ||||| |||| | | |||| Sbjct 10232 TTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC 10273 >seq93163 Length=7565 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/231 (69%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || || || |||||||| |||||| ||||||| | | ||| Sbjct 7013 CCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCAGAGAGAGT 7072 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCC---GCCGAGAT 151999 |||||||| || || || | ||||| || ||||||||| | | | | Sbjct 7073 GTGGCCATCTTCCAGCTGCTTGCCCACAAAGATGAGTGGCTGCTGGTCGCGGGGCAGGGT 7132 Query 152000 TCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTAC 152056 || || || || || || || || ||| |||||| | |||| ||| ||| || Sbjct 7133 GCCCTCTTTGTCCTGGATCTTGGCCTTAACATTCTCTATGGTGTC---ACTGGGCTCCAC 7189 Query 152057 TTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || ||||| || || ||||||||||||| |||||||| Sbjct 7190 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 7240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148639834518660