Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq141308 156 9e-33 seq68848 136 8e-27 seq31296 127 4e-24 seq66926 116 8e-21 seq148632 114 3e-20 seq271237 111 3e-19 seq106596 111 3e-19 seq177860 107 4e-18 seq94415 98.7 2e-15 seq50167 96.9 7e-15 seq174526 93.3 9e-14 seq172575 89.7 1e-12 seq76403 89.7 1e-12 seq74010 89.7 1e-12 seq72569 89.7 1e-12 seq43284 89.7 1e-12 seq26116 89.7 1e-12 seq20732 89.7 1e-12 seq25405 87.8 4e-12 seq63109 84.2 5e-11 >seq141308 Length=4330 Score = 156 bits (172), Expect = 9e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||||| || ||||| || | ||| ||||| |||||||||||||| | Sbjct 4291 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 4232 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || || |||||||||| | || |||||| || Sbjct 4231 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4172 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || ||| | ||||| ||||| | ||||| Sbjct 4171 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACC 4112 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||| ||||| || |||| ||||| ||||| ||||||||| || Sbjct 4111 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATTGTC 4061 >seq68848 Length=10048 Score = 136 bits (150), Expect = 8e-27 Identities = 171/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| ||||| |||| || || ||| |||||| ||||||||||||| | Sbjct 7266 CCGCCACGCAGACGAAGCACCAAGTGCAAAGTGGACTCTTTT-GGATGTTGTAGTCGGAC 7324 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | | |||||| || || || || ||||| |||| | || |||||| || Sbjct 7325 AGGGTCCAGTCATCCTACAGCTGCTTGCCTGCAAATATCAGCCTCTGCTGGTCAGGTGGG 7384 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC-CGAAGCTTCGAC 283051 || || |||||||||||||||| || || || | ||||| ||||| | |||| ||| Sbjct 7385 ATGCCTTCCTTGTCTTGGATCTCGGCCTTGACATTCTCGATGGTGTCACTGGGCTT-GAC 7443 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || |||||||| ||||| ||| ||| ||||| || || |||||||| || Sbjct 7444 CTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 7494 >seq31296 Length=16870 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | | |||||||| | ||| || ||||||||||||||||||| Sbjct 14445 ACCACCACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGG 14504 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || |||||||| || || || || || | ||||||| | || || ||| || Sbjct 14505 CAAAGTACGGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGG 14564 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || ||||||| || || || | || |||||||| || | || || Sbjct 14565 AATTCCTTCCTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAAC 14624 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| || || || || | ||||| ||||| |||||||| Sbjct 14625 CTCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 >seq66926 Length=10282 Score = 116 bits (128), Expect = 8e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||||| || ||||| || | ||| ||||| |||||||||||||| | Sbjct 10107 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 10166 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || || |||||||||| | || |||||| || Sbjct 10167 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10226 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039 || || |||||||| |||||||| || || ||| | ||||| ||||| Sbjct 10227 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC 10273 >seq148632 Length=3950 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | | |||||||| | || || ||||||||||||||||||| Sbjct 378 ACCACCACGAAGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGA 319 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || |||| || || || || || |||||||||| || || ||| | Sbjct 318 CAAAGTATGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGACG 259 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || |||||||| || || || | || |||||||| || | ||| || Sbjct 258 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCAAC 199 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| |||| || || ||| | | ||||| | ||| |||||||| Sbjct 198 CTCGAGCATGATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGCAT 151 >seq271237 Length=352 Score = 111 bits (122), Expect = 3e-19 Identities = 157/220 (71%), Gaps = 13/220 (6%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||||||| | ||| || ||||||||||||||||||| | || |||||||| || Sbjct 15 ACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 74 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 || || || || |||||||||| | || || ||| ||||| || ||||| || ||| Sbjct 75 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 134 Query 283011 ATCTTTGC----------TTTTACGGT-ATCGATAGTGTCCGAAGCTTCGACTTCGAGAG 283059 ||||| || |||| | || || |||||||||| | ||| || || || | Sbjct 135 ATCTTGGCCTTGACATTTTTTTTCTGTCAT--TTAGTGTCCGAGGGTTCAACCTCAAGCG 192 Query 283060 TGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| || || ||||| | ||||| || || |||||||| Sbjct 193 TGATGGTTTTCCCCGTAAGGGTCTTCACTAAAATCTGCAT 232 >seq106596 Length=6504 Score = 111 bits (122), Expect = 3e-19 Identities = 140/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||| |||||||||| || |||| | |||| || || || || || |||||| Sbjct 5515 TCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCTTCCAGCTGCTTGCCTGCAAAG 5456 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || |||||| ||||| |||| ||||||||||||||||| || || | Sbjct 5455 ATTCC-CTCTGCTGGTCAGGGGGAATGCCCTTTTTGTCTTGGATCTTTGCCTTGACCTTC 5397 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || |||||||| | ||| || || || ||||| ||||| || |||| |||| | Sbjct 5396 TCAATAGTGTCTCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTGCATA 5337 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 5336 AAGATCTGCAT 5326 >seq177860 Length=2647 Score = 107 bits (118), Expect = 4e-18 Identities = 164/230 (71%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||| | || | | |||||||| | ||| || ||||||||||||||||||| Sbjct 2592 ACCACCATGAAGTCTCAACACCAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGA 2533 Query 282931 CA-AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCC 282989 || || ||||||| || || || || || || ||||||| | | || ||| Sbjct 2532 CACTAAGTATGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTCCTGATCAGGA 2473 Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 |||| ||||||| || |||||||| || || || | || || |||||| | | ||| Sbjct 2472 AGAAT-TCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATGGTGTCCAAGGGTTCA 2414 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||| ||||| || || ||||| | ||||| ||||| |||||||| Sbjct 2413 ACCTTGAGTGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 2364 >seq94415 Length=9420 Score = 98.7 bits (108), Expect = 2e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 2879 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 2937 >seq50167 Length=24081 Score = 96.9 bits (106), Expect = 7e-15 Identities = 159/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||| |||||| | | ||||| | || ||| ||||| |||||||||||||| | Sbjct 16614 CCACCATGCAGGCAAGGCACCAGGGGCAAGGTGGAGTCTTTCTGGATGTTGTAGTCCAAA 16555 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||| |||| ||||| || ||||| |||||||| |||| | | |||||| || Sbjct 16554 AGAGTGTGGCCGTCCTCCAGCTGTTTGCCGGCAAATATCAGCCTCTACTGGTCAGATGGG 16495 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC-CGAAGCTTCGAC 283051 | || | ||||| ||| ||| | || || || | | ||||||||| | |||| | | Sbjct 16494 ACGCCTTTCTTGTTTTGTATCATGGCCTTGACATTCTGGATAGTGTCACTGGGCTT-GTC 16436 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 | ||| ||||||||| ||| | ||| || || ||||||| Sbjct 16435 CGCAAGA------GTCTTACCCATCAGGGGCTTCACAAAGATCTGCA 16395 >seq174526 Length=2783 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||||||||| || || || ||||| |||||||||||||| | Sbjct 2663 CCACCACGCAGACGAAGTACCAGGTGCAAAATGGACTCTTTCTGGATGTTGTAGTCGGAC 2722 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || || ||||||||||| || || || | |||||| |||| | || |||||| Sbjct 2723 AGGGTCCGGCCATCCTCCAGCTGCTTGCTGGCAAATATCAGCCTCTGCTGGTCA 2776 >seq172575 Length=2865 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1468 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1526 >seq76403 Length=9468 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 317 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 375 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 2806 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 2864 >seq74010 Length=9436 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 3255 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3313 >seq72569 Length=9607 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 6145 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 6203 >seq43284 Length=14024 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 11028 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 10970 >seq26116 Length=18511 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 10523 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 10465 >seq20732 Length=20618 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 3663 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3721 >seq25405 Length=23031 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 ||| ||||||||||||||||| || || || | ||||| ||||| | ||||| || Sbjct 16451 ACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTC 16392 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 |||||||| ||||| ||||||| ||||| || || |||||||| || Sbjct 16391 AAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTT 16344 >seq63109 Length=10767 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 |||||||| || | | || ||| || |||||||| || |||| | ||||||||| Sbjct 3937 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 3996 Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899 || |||| | ||| |||| |||||||| || || || ||| |||||||| |||||| Sbjct 3997 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 4056 Query 273900 ATAGTC 273905 |||||| Sbjct 4057 ATAGTC 4062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1042039059680840