Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq31296 140 2e-28 seq141308 132 3e-26 seq271237 129 4e-25 seq148632 129 4e-25 seq177860 122 6e-23 seq93163 109 4e-19 seq68848 87.8 1e-12 seq66926 87.8 1e-12 >seq31296 Length=16870 Score = 140 bits (154), Expect = 2e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCG 44178 |||||||||||||| ||||| ||| |||||||||||||||||| || ||| | | | Sbjct 14455 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGTACGG 14514 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 | | || ||||||||||| || | ||||||| | ||||||||| | ||| | ||||| Sbjct 14515 C-CATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTC 14573 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 ||| ||| ||||| ||| | || |||| ||||| | || || ||||| | ||| Sbjct 14574 CTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACCTCGAGCGT 14633 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || |||||||||||||| || ||||| Sbjct 14634 GATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 >seq141308 Length=4330 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || |||||||| || ||| ||| || ||||||||||| || Sbjct 4295 CATCCCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 4236 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 4235 GGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGG 4176 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| ||| | |||| | |||||||| || | Sbjct 4175 GGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCACTGGGCT 4117 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 4116 CGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 4065 >seq271237 Length=352 Score = 129 bits (142), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 9/227 (4%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||||||||||||| ||||| ||| |||||||||||||||||| || | | || Sbjct 6 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 65 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || |||||||||| | ||||||||| | ||| | |||||| Sbjct 66 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 125 Query 44240 TTTTCCGTTATCTTCTGCTTCA-ATGT--------TCCTATGGTGTCGGCGGATTCCACC 44290 || ||| ||||| ||| | || | || | | ||||| | || ||| ||| Sbjct 126 TTATCCTGGATCTTGGCCTTGACATTTTTTTTCTGTCATTTAGTGTCCGAGGGTTCAACC 185 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | ||| || || || ||||| ||||||||||| || || ||||| Sbjct 186 TCAAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACTAAAATCTGCAT 232 >seq148632 Length=3950 Score = 129 bits (142), Expect = 4e-25 Identities = 163/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GT-TGG 44176 |||||||||||||| ||||| || |||||||||||||||||| || | | || ||| Sbjct 368 AGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGG 309 Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236 || || ||||||||||| || |||||||||| ||||||||| | | | | ||| Sbjct 308 ---TCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGACGAATTCCT 252 Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACC 44296 ||||| ||| ||||| ||| | || |||| ||||| | || ||| ||||| | | Sbjct 251 TCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGC 192 Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || ||| | |||||||||| ||| || ||||| Sbjct 191 ATGATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGCAT 151 >seq177860 Length=2647 Score = 122 bits (134), Expect = 6e-23 Identities = 162/223 (73%), Gaps = 9/223 (4%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGT-----T 44174 |||||||||||||| ||||| ||| |||||||||||||||||| || | | | | Sbjct 2582 AGTCTCAACACCAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACACTAAGTAT 2523 Query 44175 GGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACAC 44234 ||| | || ||||||||||| || || ||||||| | || |||||| | | | | | Sbjct 2522 GGC---CATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTCCTGATCAGGAAGAATTC 2466 Query 44235 CTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCA 44294 | ||||| ||| ||||| ||| | || |||||||||| || ||| |||| | Sbjct 2465 C-TCCTTATCCTGGATCTTGGCCTTGACATTTTCTATGGTGTCCAAGGGTTCAACCTTGA 2407 Query 44295 CCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || ||||| |||||||||||||| || ||||| Sbjct 2406 GTGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 2364 >seq93163 Length=7565 Score = 109 bits (120), Expect = 4e-19 Identities = 154/213 (72%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| ||| || |||||| ||||||| | ||| | | | || ||| Sbjct 7026 ACCAGGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCAGAGAGAGTGTGGCCATCTTCC 7085 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACA---CCTTCCTTTTCC 44245 |||||||| || ||||||| | ||||||| || |||| || || || ||| Sbjct 7086 AGCTGCTTGCCCACAAAGATGAGTGGCTGCTGGTCGCGGGGCAGGGTGCCCTCTTTGTCC 7145 Query 44246 GTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| || ||| |||||||||| || |||||||||| || || || Sbjct 7146 TGGATCTTGGCCTT-AACATTCTCTATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 7204 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || ||||||||||||||||||||||| Sbjct 7205 CTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 7237 >seq68848 Length=10048 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | ||| ||| |||||||||||||| |||| || | || || | Sbjct 7283 CACCAAGTGCAAAGTGGACTC-TTTTGGATGTTGTAGTCGGACAGGGTCCAGTCATCCTA 7341 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || ||||| |||| | |||||| || | || | |||||||| || Sbjct 7342 CAGCTGCTTGCCTGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTG 7401 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||| || || | | ||| | |||||||| || | ||||| | || || |||| Sbjct 7402 GATC-TCGGCCTTGACATTCTCGATGGTGTCACTGGGCTTGACCTCAAGAGTGATGGTCT 7460 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||| | ||||||||||| ||||| |||||| Sbjct 7461 TGCCCATCAGGGTCTTCACAAAGATCTGCATG 7492 >seq66926 Length=10282 Score = 87.8 bits (96), Expect = 1e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || |||||||| || ||| ||| || ||||||||||| || Sbjct 10103 CATCCCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 10162 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 10163 GGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGG 10222 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTC 44277 || | |||||||| ||| ||||| || | | |||| | |||||||| Sbjct 10223 GGGGATGCCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCGATGGTGTC 10273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358452797753820