Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq26677 147 3e-30 seq108476 125 1e-23 seq66105 125 1e-23 seq143447 98.7 1e-15 >seq26677 Length=18315 Score = 147 bits (162), Expect = 3e-30 Identities = 204/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || || |||||| ||||||||||| | || | |||| ||| Sbjct 12054 AAGGGACAGCCCTTCACATTCTTACAGATGAGAGACTGAATGGAGGCAGTGTTGATAATC 11995 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || ||||| ||||| || || ||||| |||||||||||| || || |||||| Sbjct 11994 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGGAGAACAGATGGGA 11935 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| |||| || ||| Sbjct 11934 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 11875 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | ||||| ||||||||||||| | | | ||||||||||| || || | | Sbjct 11874 ATAGCATCTGGACGTGGCTTTTCCACCAGCAGGGCAGGGTACAGCTCCATGGCATCAATG 11815 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||| ||||| | || || || || ||||| ||||||| Sbjct 11814 TCACTGTAGAGGGCTTCCAACTCTGCGGCCATTTCCTTCTCTCCTG 11769 Score = 116 bits (128), Expect = 5e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| |||||||||| ||||| | || |||||| | ||| ||| | || Sbjct 9191 TCTTACCCCATGGCCCAGTCCTTGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAA 9132 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| ||||||| |||||||| | || | ||| || ||||| Sbjct 9131 AAACTGATGAGTGAAGTGCTGGGCAAAAAATGCAAACATCATATTCGAGCCTTGAGGATC 9072 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 ||| |||| | |||| |||||| ||| |||| ||| Sbjct 9071 AGGAATGAACTTTCTCCTTAGAAGAACTTTGTCCAGAAC 9033 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 9909 CACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGT 9968 ||||||| || || | ||||| || || |||| | || ||||| || || | || Sbjct 8451 CACCTTTCACACCCATGGGAGTCGGGCAGTCGTCGGCTACAGGAGGAAGTGCTCTGGTGT 8392 Query 9969 AATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGG 10028 | |||||||| |||||||| ||||||||| || ||| | |||| | ||||||| | | Sbjct 8391 AGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTTTTGTAACCATAGTGCACGTTGTAAGTTG 8332 Query 10029 GAGGGCTGTCAATCAAATCGGATCT 10053 | || ||||||||||||| ||||| Sbjct 8331 GCGGACTGTCAATCAAATGTGATCT 8307 >seq108476 Length=6366 Score = 125 bits (138), Expect = 1e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 8362 GAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTT 8421 ||| ||||| || || ||||| |||||||||||||| ||| | || || || ||| || Sbjct 5251 GAAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATT 5192 Query 8422 CGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481 | | | ||| || |||||||| || |||||||| | ||| | |||||||| || ||||| Sbjct 5191 CCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATGCTCTCCCCAAAGAT 5132 Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || |||||| || |||||||| | || || | ||| | ||| | || |||| ||| Sbjct 5131 GGAGTTGGGCTGGCACTTTTCCAGAAGCAACCCTGGGTAGAACTCTAAGGCATCGATGTC 5072 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || || | || || || |||| ||| ||||||| Sbjct 5071 ACCATACAGCTCCTCCAACTCAGCTGCCATCTTCTTCTCTCCTG 5028 >seq66105 Length=10384 Score = 125 bits (138), Expect = 1e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 8362 GAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTT 8421 ||| ||||| || || ||||| |||||||||||||| ||| | || || || ||| || Sbjct 4745 GAAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATT 4686 Query 8422 CGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481 | | | ||| || |||||||| || |||||||| | ||| | |||||||| || ||||| Sbjct 4685 CCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATGCTCTCCCCAAAGAT 4626 Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || |||||| || |||||||| | || || | ||| | ||| | || |||| ||| Sbjct 4625 GGAGTTGGGCTGGCACTTTTCCAGAAGCAACCCTGGGTAGAACTCTAAGGCATCGATGTC 4566 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || || | || || || |||| ||| ||||||| Sbjct 4565 ACCATACAGCTCCTCCAACTCAGCTGCCATCTTCTTCTCTCCTG 4522 >seq143447 Length=4215 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/166 (73%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||||||||||||| || ||||||||| ||| || || Sbjct 469 TCACCTATAAGGATGAGGCGAGTGGTCTGGAAGAGCTGCTCGTCATCCCAGGTGGGGTGC 528 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACAT- 9350 || | ||||| | |||||||| | ||||||||| | |||||||| |||| |||| Sbjct 529 TCCTCCTTCAGCAGGTCGCACACGCGGTTGTGTTCACGCAGCCAGATCGTGG---ACATG 585 Query 9351 --CATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||| ||||| || | || ||||| |||| || || || |||| Sbjct 586 ACCATCAGCCCTGGGAGCAACCCAAACACCTCCTGGCCCACGGCCA 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713736341958400