Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq141308 158 3e-33 seq31296 158 3e-33 seq177860 129 1e-24 seq93163 127 5e-24 seq66926 123 6e-23 seq13750 102 2e-16 seq68848 100 7e-16 seq57751 87.8 4e-12 >seq141308 Length=4330 Score = 158 bits (174), Expect = 3e-33 Identities = 168/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || ||||| || || |||||||| ||||| || || ||| Sbjct 4068 CAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGA--GCCCAGTG 4125 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| ||||| ||||| || ||||||| Sbjct 4126 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGC 4185 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 4186 AGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 4245 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| ||||| || || ||||| || || || | ||||| Sbjct 4246 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCAG 4285 >seq31296 Length=16870 Score = 158 bits (174), Expect = 3e-33 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || ||||| ||||| ||||| |||||||| || ||||||| Sbjct 14669 CAGATTTTCGTGAAGACCCTTACAGGGAAAACCATCACGCTCGAGGTTGAGCCCTCAGAC 14610 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| | ||| || |||||||| ||||| || ||||| Sbjct 14609 ACTATAGAAAATGTCAAGGCCAAGATCCGGGATAAGGAAGGAATTCCTCCTGATCAGCAG 14550 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGT 178102 | || |||||| | || || ||||| |||||||| | ||| ||||| || || ||| | Sbjct 14549 AGGCTGATCTTCCCTGGCAAGCAGCTGGAAGATGGCCGTACT-TTGCCTGACTACAACAT 14491 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||||| || || || || ||||| || |||||||| Sbjct 14490 CCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACT 14455 >seq177860 Length=2647 Score = 129 bits (142), Expect = 1e-24 Identities = 160/217 (74%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || ||||| ||||| ||| |||| ||| || ||| Sbjct 2367 CAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTTGGAC 2426 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| ||||| ||| |||||| | ||| || ||| | Sbjct 2427 ACCATAGAAAATGTCAAGGCCAAGATCCAGGA-TAAGGAGGAATTCTTCCTGATCAGGAG 2485 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT--CTTGCCGATTATAACG 178101 | || |||||||| || || ||||| |||||||| ||| | | || || ||| Sbjct 2486 AGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCATACTTAGTGTCTGACTACAACA 2545 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||||| || || ||||| ||||| || |||||||| Sbjct 2546 TCCAAAAGGAGTCCACACTTCATCTGGTGTTGAGACT 2582 >seq93163 Length=7565 Score = 127 bits (140), Expect = 5e-24 Identities = 165/223 (74%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 177912 GTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTG 177971 || ||||||| |||| |||||||| || || || || || || |||||||| |||||| Sbjct 7243 GTCAAAATGC---AAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTG 7187 Query 177972 GAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 || || ||| ||||||| ||||| || || ||||| ||||||||||| || | || Sbjct 7186 GA--GCCCAGTGACACCATAGAGAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCACCC 7129 Query 178030 --CTCCG-GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086 | ||| |||||||| | ||| ||||| | || || ||||| |||||||| |||| Sbjct 7128 TGCCCCGCGACCAGCAGCCACTCATCTTTGTGGGCAAGCAGCTGGAAGATGGCCACACTC 7069 Query 178087 TTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| | | |||| ||||| || || ||||| || || Sbjct 7068 TCTCTGATTACAGCATCCAGAAAGAGTCCACCCTGCACCTGGT 7026 >seq66926 Length=10282 Score = 123 bits (136), Expect = 6e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||||||||| ||||| |||||||| ||||| ||||| || |||||| Sbjct 10273 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 10214 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 10213 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 10154 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| ||||| || || ||||| || || || | ||||| Sbjct 10153 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCAG 10113 >seq13750 Length=24615 Score = 102 bits (112), Expect = 2e-16 Identities = 157/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| |||||||| || | || | || || |||||||| ||||||| || ||| Sbjct 22458 CAAATCTTCGTGAAGACCTTGACCAGCAAGACCATCACCCTGAAGGTGGA--GCCCAGTG 22401 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATC-CCTCCGGACCAG 178040 ||||||||||||| ||||| ||||| |||||||||| || | | || || ||||| Sbjct 22400 ACACCATCGAGAATGTCAAGACCAAGATCTAGGACAAAGAGGGCACCTCCCCCACACCAG 22341 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| | | || ||||| ||||||| ||||| | | || ||| Sbjct 22340 CAGCAACCCATCTTGGAGGACAAGCAGCTGCAAGATGGCCACGCTCTTTCTAAATACAAC 22281 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| |||||||| || ||| | || || | ||||||| Sbjct 22280 ATCCAGAAAGAATCCACCCTGTACCTGGTCCTCTGACTCAG 22240 >seq68848 Length=10048 Score = 100 bits (110), Expect = 7e-16 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || | || || || ||||| || ||||| |||| ||| Sbjct 7488 CAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTC--AAGCCCAGTG 7431 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||| || ||||| ||||| ||||| || ||||||| Sbjct 7430 ACACCATCGAGAATGTCAAGGCCGAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGC 7371 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || || ||||| | |||| |||| || |||| || ||| Sbjct 7370 AGAGGCTGATATTTGCAGGCAAGCAGCTGTAGGATGACTGGACCCTGTCCGACTACAACA 7311 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 ||| |||||| || || |||| |||| Sbjct 7310 TCC-AAAAGAGTCCACTTTGCA-CTTG 7286 >seq57751 Length=11510 Score = 87.8 bits (96), Expect = 4e-12 Identities = 154/222 (69%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| || ||||| || | || || || || ||||| |||| Sbjct 10901 AGGTCAAAATGC---AAATCTTTGTGAAGACCCAGACCCACAAGACCATTACCCTAGAGG 10845 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| || |||| ||||| || || ||||||||||| ||||| || || Sbjct 10844 TGGA--GCCCAGTAACGCCATTGAGAATGTGAAGGTCAAGATTCAGGATAAAGAGGGCAT 10787 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || ||||| || | ||||| || || || ||| |||| ||| ||||| Sbjct 10786 ACCCCCTGACCAACAGAAGCAAATCTTTGCAGGCAAGCAGTCGGAAGGTGGTTACACTCT 10727 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||| | || | || |||||||| || ||||| || || Sbjct 10726 TTCTGATCACGACATTCAGAAAGAATCCACCCTGCACCTGGT 10685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1198326123409240