Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq141308 129 5e-25 seq68848 102 8e-17 seq66926 100 3e-16 seq31296 95.1 1e-14 seq93163 91.5 1e-13 seq106596 86.0 6e-12 >seq141308 Length=4330 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| |||||||| |||||||| | || || Sbjct 4273 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 4214 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | ||| | || ||||||||| | Sbjct 4213 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 4154 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||| ||||||| || || || || Sbjct 4153 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 4094 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| ||||| |||||||| Sbjct 4093 CCTGTCAGGGTCTTCACGAAGATCTGCAT 4065 >seq68848 Length=10048 Score = 102 bits (112), Expect = 8e-17 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | ||||| |||| ||| ||| || || ||||| |||||||| Sbjct 7265 GCCGCCACGCAGACGAAGCACCAAGTGCAAAGTGGACTCTTT-TGGATGTTGTAGTCGGA 7323 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | || || | ||||||||||| || |||||||| | ||| ||||| | || Sbjct 7324 CAGGGTCCAGTCATCCTACAGCTGCTTGCCTGCAAATATCAGCCTCTGCTGGTCAGGTGG 7383 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| | ||| | | | ||||| || | || || Sbjct 7384 GATGCCTTCCTTGTCTTGGATCTCGGCCTTGACATTCTCGATGGTGTCACTGGGCTTGAC 7443 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||| |||| ||||| || || ||||||||||| Sbjct 7444 CTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 7494 >seq66926 Length=10282 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| |||||||| |||||||| | || || Sbjct 10125 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 10184 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | ||| | || ||||||||| | Sbjct 10185 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 10244 Query 41774 ATTTT 41778 || || Sbjct 10245 ATCTT 10249 >seq31296 Length=16870 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||||||| || ||| |||||| || ||||| ||||| | | || || | || Sbjct 14461 AACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGTACGGCCATCT 14520 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || ||||||||||| | ||| ||||| | ||| || || | |||| | ||||| ||| Sbjct 14521 TCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 14580 Query 41771 ATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || ||| | | |||||| | ||| ||||| | ||| || ||| Sbjct 14581 CGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACCTCGAGCGTGATGGTT 14640 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| |||||||||||||| Sbjct 14641 TTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 >seq93163 Length=7565 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||| ||||| ||| | || || ||||| ||| | Sbjct 7017 AGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCAGAGAGAGTGTGG 7076 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG--GAACGCTC 41761 | || || ||||||||||| | || || || |||| ||||| || || | || | Sbjct 7077 CCATCTTCCAGCTGCTTGCCCACAAAGATGAGTGGCTGCTGGTCGCGGGGCAGGGTGCCC 7136 Query 41762 TCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACC 41821 || |||||| ||| || ||| | | | ||||| || | ||||||||||| Sbjct 7137 TCTTTGTCCTGGATCTTGGCCTTAACATTCTCTATGGTGTCACTGGGCTCCACCTCCAGG 7196 Query 41822 GTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || ||||| ||||| ||||| || ||||| || Sbjct 7197 GTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 7240 >seq106596 Length=6504 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| |||| ||| ||| ||||| || || ||||| || ||||||| | || || Sbjct 5533 ACCAGGAGCAGGGTGGACTCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCTTCC 5474 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || | ||| ||||| | ||||| || || ||||| | Sbjct 5473 AGCTGCTTGCCTGCAAAGAT-TCCCTCTGCTGGTCAGGGGGAATGCCCTTTTTGTCTTGG 5415 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||| | | | | |||||| || | || ||||||| || || || || Sbjct 5414 ATCTTTGCCTTGACCTTCTCAATAGTGTCTCTGGGTTCAACCTCCAGGGTGATGGTCTTG 5355 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| |||| | || |||||||| Sbjct 5354 CCTGTCAGGGTCTGCATAAAGATCTGCAT 5326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460278761752000