Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq71464 93.3 4e-14 seq71956 82.4 8e-11 >seq71464 Length=6720225 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| ||||||||||||||||| || | || ||||| ||| |||||||| Sbjct 4556654 TCATCTCTGCTAATAAGTTCGTTGGAAAAGGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 4556713 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | |||||| || | ||||| || || |||||||| || || || || | ||||| ||| Sbjct 4556714 AGCCAGAAAATGGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCCGCAAAGGCG 4556773 Query 16346 A 16346 | Sbjct 4556774 A 4556774 >seq71956 Length=2248420 Score = 82.4 bits (90), Expect = 8e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 15930 GTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGA- 15988 |||| || | ||| || ||||| || |||||||| |||||||||||||||| |||||| Sbjct 2136991 GTTTCTCAAGGAAATTTGTTTTCCCTTCTAAAGAAATATTTTCCATAAAATTGAAGGGAT 2137050 Query 15989 TTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAA 16047 || | ||||||| | ||| ||| | ||||| ||| | | |||| ||| || ||||| Sbjct 2137051 TTTCTGCCTGAAAA-ACCTTTGAGAATCCCAGCTCCATCAGCAATCCATCCGCAACAAA 2137108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510936675023600