Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq70384 122 7e-23 seq72168 87.8 1e-12 >seq70384 Length=4945429 Score = 122 bits (134), Expect = 7e-23 Identities = 265/397 (67%), Gaps = 0/397 (0%) Strand=Plus/Plus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 |||||||| |||||| |||| |||||||||||||| |||| | || || || |||| | Sbjct 1455662 GGGGACCTGGGCCCCGTTTATGGCTTCCAGTGGAGGTATTTCAGGGCTGACTACAAAGGC 1455721 Query 18849 TGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATT 18908 | ||| | || | |||||||| || |||||||| | || || | || || Sbjct 1455722 ATCGAGTCAGATTACTCGGGTCAAGGAATGGACCAGCTGCAGAAGGTGATCAACACCATC 1455781 Query 18909 AAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCC 18968 ||||| ||||| || | | || | || || | | ||||| || || || |||| Sbjct 1455782 AAAACCAACCCTGACGACAGGAGACTCATCATGTGCACCTGGAACCCGAAAGAGCTCCCT 1455841 Query 18969 TTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTA 19028 | |||| || ||||| || ||| | | | ||||| ||||| | ||| | || | Sbjct 1455842 CTGATGGCGCTGCCTCCCTGCCACGCCCTCTACCAGTTCTACGTGGTGAACTGGGAGCTG 1455901 Query 19029 TCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCT 19088 | ||||| | |||||| || | ||| |||| || || | || ||||| | | Sbjct 1455902 TACTGCCCGCTGTACCAGCTCTCTGTGGACATGGACCAGGGCCTGCCCTTCAAAGTCTCC 1455961 Query 19089 GGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTA 19148 | ||| | || || ||||||||||| || | | || || || | || || || || Sbjct 1455962 AGCTATACCCTGCTCACCTACATAGTCGCTCCCATCACTGGCCTGCAGACAGGTGACTTC 1456021 Query 19149 ATTCATACAATGGGGGATGCACATATTTACTTGAATC 19185 | |||| ||| ||||||||||||||| |||||| Sbjct 1456022 GTACATATTTGGGGAGATGCACATATTTACCTGAATC 1456058 >seq72168 Length=9498425 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| |||| | |||| || ||||| || ||| | | || || || || || | ||| Sbjct 6792674 GATCTCCCTCTGATGGCGCTGCCTCCCTGCCACGCCCTCTGCCAATTCTATGTGGTGAAC 6792615 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || || | |||||||| | |||||| | || ||||| |||||||| || || || ||| Sbjct 6792614 GGGGAGCTGTCCTGCCAGCTGTACCAGCGCTCCGGGGACATGGGCCTGGGCGTGCCCTTC 6792555 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCA 19120 ||||| || | || || || ||||||||||| || || || Sbjct 6792554 AACATCGCCAGCTACGCCCTGCTTACCTACATGGTCGCTCA 6792514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399140142992850