Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq72512 181 8e-41 seq70139 104 2e-17 >seq72512 Length=13930272 Score = 181 bits (200), Expect = 8e-41 Identities = 215/284 (76%), Gaps = 8/284 (3%) Strand=Plus/Minus Query 3975 ATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAG 4034 ||| || ||| ||||||||||||||||||| || | |||||| || || | | |||||| Sbjct 10956542 ATTGTTTTCACATACTTCAAATTTGTACTTCATGCCTTTCTCCTCCTGATC-TCAGAAAG 10956484 Query 4035 AACACTTGGATATTCTATCAAAAGTTTGTA-TTTCTCTAGATCAAATTCTGGAAAAAAGG 4093 ||| ||||||||||| ||||||||| ||| || | ||||| |||||||||| | Sbjct 10956483 TACATCTGGATATTCTAG---AAGTTTGTAGTTTTTCCA-ATCAATTTCTGGAAAAGTG- 10956429 Query 4094 TGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAAC 4153 ||||| |||||| || | | |||| |||||||| || || ||| | ||| || Sbjct 10956428 TGTCATTTTCAAATTCCTACGCGATCTGTGTCACAAATAGCTTGAGACAGTCTGGCCAAT 10956369 Query 4154 TCATA-GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTT 4212 ||| | ||||| |||| |||||||||||||| | ||||| |||| ||| ||||||||| Sbjct 10956368 TCACAAGCTTCGGTATAAACAGAACTACCTCCCGTGATCCAAACCAAGTCCACTTTATTT 10956309 Query 4213 GCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACT 4256 |||||||| ||||| || ||||| ||| ||| || | | ||| Sbjct 10956308 GCTAATTCCGGCTGCTCAACAAGTTGTAAGGCAACACCCAGACT 10956265 >seq70139 Length=1650317 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 4061 TGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCC 4120 ||||||||| ||||||| |||||||||||| ||||||| ||| || || |||||||||| Sbjct 1362991 TGTATTTCTTCAGATCAATTTCTGGAAAAAACGTGTCACTTTCGAATTCCTGCATGATCC 1362932 Query 4121 TAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTA 4167 | |||||||||||||| |||| || || | ||| ||||| ||| Sbjct 1362931 TCGTCACAAACAGTTTGAGATGGCCCGGCCGATCCATGGCTTCCTTA 1362885 Score = 102 bits (112), Expect = 6e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | || || || |||||||||||| | || ||||| || ||||||||||| Sbjct 1356172 CTTGAGTTCTCTACTTAGTACTACATTAATTCTGTCCTTCAAAGGTCGATTCTTCTCAGG 1356113 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 || |||||||| ||||| | ||||||||||| | |||||||||| || Sbjct 1356112 GATGGAGAACCAGGTCTTCCTTCCCATAATCACCAGATTCTGTTTACCT 1356064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 || ||||||||||| || || | |||||| |||||||| ||| | |||||||||||| Sbjct 1361318 TTGTACACAGAACTGCCGCCCACTATCCACACCATGTCCACTCTGCGTGCTAATTCTGGT 1361259 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || |||| || || || ||||| | ||| | || | ||||||||| | || ||| Sbjct 1361258 TGCTCAATAAGCTTCAAGGCGTCATCCAGACTTTGGGCAAGAAAATGAGCCCCTTGGGGA 1361199 Query 4285 AGCTCC 4290 | ||| Sbjct 1361198 GGTTCC 1361193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360922182567230