Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq70448 96.9 3e-15 seq71171 82.4 7e-11 >seq70448 Length=578665 Score = 96.9 bits (106), Expect = 3e-15 Identities = 170/244 (70%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 28927 AGCAACCGTTGTCATTTATAAGTAATAGTGTAAAAATGCAAATATTCATCAAAACATTGA 28986 || ||| ||||||||| ||| || ||| || |||||||| || || | || || ||| Sbjct 511186 AGTAACACTTGTCATTT-TAATTA-TAG-GTCAAAATGCAGATCTTTGTGAAGACCCTGA 511242 Query 28987 CGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTTAAGCAAA 29046 | ||||| ||||| ||| || ||| ||| || || | | || | ||| | Sbjct 511243 CTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGATACCATTGAGAATGTGAAGGCCA 511302 Query 29047 AAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAAC 29106 | || ||||||||||| | || || || || || || |||||||| ||||| | Sbjct 511303 AGATCCAGGATAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGC 511362 Query 29107 AACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACA 29166 | ||||||||| | ||| | | || |||||||||||||| || |||||||||||| Sbjct 511363 AGCTGGAAGATGGCCGCACTCTTTCTGACTACAATATTCAGAAAGAGTCTACTCTTCACC 511422 Query 29167 TGGT 29170 |||| Sbjct 511423 TGGT 511426 >seq71171 Length=10874107 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28956 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 29015 || |||||||| || || | || || |||| ||||| ||||| ||| || ||| Sbjct 9049190 GTCAAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAG 9049249 Query 29016 CCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 29075 ||| || || | | || | ||| || || ||||||||||| | || Sbjct 9049250 CCCAGTGATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCT 9049309 Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || || || || || |||||||| ||||| || ||||| ||| | ||| | | || Sbjct 9049310 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGACGATGGCCGCACTCTTCCTGAC 9049369 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||||||||||| || |||||||||||| |||| Sbjct 9049370 TACAATATTCAGAAAGAGTCTACTCTTCACCTGGT 9049404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427945883618150