Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq74511 266 4e-66 >seq74511 Length=2205151 Score = 266 bits (294), Expect = 4e-66 Identities = 261/337 (77%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||| | |||| | |||||||||||| Sbjct 1231849 AGCAGGGCTTCGATGTCAGGCTCAAGGTCGATGGTAGGAAAGCGACGACTGTACCTGCGC 1231790 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 ||||| ||||| | || |||| ||||||||| || ||||||||||| || |||||| Sbjct 1231789 ACGGGTACACCGTCGGGGCCTACCAGGAACTTCTCAAAATTCCAGGCCACATCATTGCGG 1231730 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||| |||||| |||| || ||||||| ||| ||||| | |||||| ||| Sbjct 1231729 CACACTGGGGACCAGATGATGAACTTGGGGTCGGTCATGAGCGCAGTGGGGTCGTCACTA 1231670 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| |||||||||||||| ||||||| |||||||||||||||| | || || || ||| Sbjct 1231669 GGCGCTGGCAGGGCCTCTCGAAGGAAGGTGAAGAGCGGATGTGCCTTCGCCCCATTCACC 1231610 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||||||||| | ||||| |||||||| || || || ||||||| || Sbjct 1231609 TCGCACTTCTCGAAGAGAGTGAAGTTGGGCTCGAACCCACCACCTGGCCGGACGTATTTG 1231550 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 || || ||| || || | |||| ||||| |||| Sbjct 1231549 AGCAAATTCAAAATTTCTTCGTTCTTTGCGTTCTCCT 1231513 Score = 176 bits (194), Expect = 5e-39 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| || |||||||| |||||||| || ||||||||||| |||| | || |||| Sbjct 1231299 CCTGGTGTCCAAACTGGTTGCACGGGAAGCCGAGCACTACCAGGCCCCTGGGCCCGAGGC 1231240 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || |||||||||||||||||| ||| | |||||||||||| | ||||||||||| || | Sbjct 1231239 GCGCCTGCAGCTCGTTCATCTGGGTGAAGTCCCGGACCGTGGTGCCTCAGAGGGATGCCA 1231180 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||||| | |||| | || | || || | || | Sbjct 1231179 CATTCTCGATGAGCAGCACCTTGCCCCGCAGTGAGCCGAGACTGAGCGGCTCCTCGCCAG 1231120 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAG 83600 | ||||||||| ||||||| |||||||| Sbjct 1231119 CCAGCGGGCGTGCGGAGAAGGAGTACACAG 1231090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608228107689200