Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq70448 122 7e-23 seq72916 116 3e-21 seq71171 116 3e-21 >seq70448 Length=578665 Score = 122 bits (134), Expect = 7e-23 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| || | ||| ||||| || ||||| || ||||| | | Sbjct 511441 CCCCTC--AGACGGAGGACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGAAA 511384 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| || | Sbjct 511383 GAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGA 511324 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 |||||| || || |||||| ||||| | | | ||||||| ||||||| | Sbjct 511323 TGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCT 511264 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||| ||| ||||||||||| || | || || ||||| || |||||||||| Sbjct 511263 CCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTGA 511213 >seq72916 Length=12258079 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | |||||| | |||| ||||||||||| || ||||| ||||| | | Sbjct 7817661 CCACCTCTCAGACGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 7817602 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | |||| |||||||| ||||| ||| | || || ||||||||||| || Sbjct 7817601 AGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 7817542 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | ||| || |||| ||| ||| Sbjct 7817541 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACC 7817482 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || || || || ||||| Sbjct 7817481 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817435 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | |||||||| ||||| ||||||||||| || ||||| ||||| | || Sbjct 7817886 CCCCTC--AGACGGAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACA 7817829 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || | | || |||||||| ||||| ||| | || || ||||||||||| || | Sbjct 7817828 GAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGA 7817769 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| |||||||| |||||| || || | ||| || |||| ||| ||| | Sbjct 7817768 TGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCT 7817709 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | | ||| ||||||||||| || | || || || || || ||||| Sbjct 7817708 CGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817663 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | |||||| | |||| ||||||||||| || ||||| ||||| | | Sbjct 7817433 CCACCTCTCAGACGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 7817374 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||||||| ||||| ||| | || || ||||||||||| || Sbjct 7817373 AGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 7817314 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | ||| || |||| ||| ||| Sbjct 7817313 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACC 7817254 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||| ||||||||||| || | || || || || || |||||| Sbjct 7817253 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 7817206 >seq71171 Length=10874107 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | ||| ||||| || ||||| || ||||| | || || || | || Sbjct 9049407 AGGACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGGAAGAGTGCGGCCATCG 9049348 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| || | |||||| || || Sbjct 9049347 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 9049288 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | ||||||| ||||||| |||| ||| |||||| Sbjct 9049287 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 9049228 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||| || | || || ||||| || |||||||||| Sbjct 9049227 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTGA 9049191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421874618196680