Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq70448 87.8 1e-12 >seq70448 Length=578665 Score = 87.8 bits (96), Expect = 1e-12 Identities = 168/244 (69%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 25000 AGCAACCGTTGTCATTTATAAGTAATAGTGTAAAAATGCAAATATTCATCAAAACATTGA 25059 || ||| ||||||||| ||| || ||| || |||||||| || || | || || ||| Sbjct 511186 AGTAACACTTGTCATTT-TAATTA-TAG-GTCAAAATGCAGATCTTTGTGAAGACCCTGA 511242 Query 25060 CGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAA 25119 | ||||| ||||| ||| || ||| ||| || || | | || | ||| | Sbjct 511243 CTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGATACCATTGAGAATGTGAAGGCCA 511302 Query 25120 AAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAAC 25179 | || ||||||||||| | || || || || || || |||||||| ||||| | Sbjct 511303 AGATCCAGGATAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGC 511362 Query 25180 AATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACA 25239 | |||||||| | ||| | | || ||||||||||| || || |||||||||||| Sbjct 511363 AGCTGGAAGATGGCCGCACTCTTTCTGACTACAATATTCAGAAAGAGTCTACTCTTCACC 511422 Query 25240 TGGT 25243 |||| Sbjct 511423 TGGT 511426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410422657828220