Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq72916 167 2e-36 seq74017 120 3e-22 seq71171 105 7e-18 seq72832 100 3e-16 seq71464 93.3 4e-14 >seq72916 Length=12258079 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| ||| Sbjct 7817663 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAACCCAGT 7817722 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| ||||||||||| | |||||| Sbjct 7817723 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCTGACCAG 7817782 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||| || |||||||||| Sbjct 7817783 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCCGACTACAAC 7817842 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| |||||||| ||| | || ||||||| || Sbjct 7817843 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTCCGTCTGAGGGGAGG 7817889 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| ||| Sbjct 7817435 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAACCCAGT 7817494 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| ||||||||||| | |||||| Sbjct 7817495 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCTGACCAG 7817554 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| |||| |||||| || |||||||||| Sbjct 7817555 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCCGACTACAAC 7817614 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| || ||| | || |||| || || Sbjct 7817615 ATCCAGAAGGAGTCCACCCTGCACCTCGTGCTCCGTCTGAGAGGTGG 7817661 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| ||| Sbjct 7817206 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAACCCAG 7817265 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || || | ||||| ||||||||||| | ||||| Sbjct 7817266 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCTGACCA 7817325 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||| || ||||||||| Sbjct 7817326 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCCGACTACAA 7817385 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || ||| | || |||| || || Sbjct 7817386 CATCCAGAAGGAGTCCACCCTGCACCTCGTGCTCCGTCTGAGAGGTGG 7817433 >seq74017 Length=2439271 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||||||||| ||||| || || ||||| ||||| ||||| ||||||||||| || | Sbjct 43774 TGGTGGCCTTTGCGGCTGTGGAAGGCGTGTTCTTCTCGGGGTCCTTCGCCGCCATCTTCT 43715 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||||||||| ||||| || ||| ||||||||||||| ||| | Sbjct 43714 GGCTGAAGAAGAGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCAGCAGAG 43655 Query 117162 ACGAGG 117167 |||||| Sbjct 43654 ACGAGG 43649 Score = 100 bits (110), Expect = 3e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTT 116859 || ||| ||||| ||| |||||||||||||| | ||||| || |||||||||||||| Sbjct 45874 TCAGGTGGAGCGCTTCAGCCAGGAGGTGCAGGTCCCTGAGGCCCGCTGCTTCTACGGCTT 45815 Query 116860 TCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| ||| |||||||||||||| || ||||| ||||| ||||||||| Sbjct 45814 CCAGATCCTCATCGAGAACGTGCACTCCGAGATGTACAGCTTGCTCATAGACACGTAC 45757 >seq71171 Length=10874107 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 9049193 AAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 9049252 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | | |||| || || | || ||||| |||||||| | ||| Sbjct 9049253 AGTGATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGAC 9049312 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | ||||||| || ||||| ||||||||||| | ||||| || |||||| Sbjct 9049313 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGACGATGGCCGCACTCTTCCTGACTAC 9049372 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || || ||||| ||| | || || || || || | | ||||||| ||| Sbjct 9049373 AATATTCAGAAAGAGTCTACTCTTCACCTGGTCCTTCATCTGAGGGGTGGC 9049423 >seq72832 Length=2463344 Score = 100 bits (110), Expect = 3e-16 Identities = 270/414 (65%), Gaps = 32/414 (8%) Strand=Plus/Minus Query 116762 GCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG 116821 |||||||| || ||||| |||| || || || || || || | |||| ||| ||| Sbjct 1608064 GCCTTTTTTGCAGCCAGTAACGGGATTGTAAATGAACATTTGCTGGAGCTCTTCAGGCAG 1608005 Query 116822 GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTG 116881 ||||||||||| ||||||| ||| ||| ||||||||| | Sbjct 1608004 GAGGTGCAGGTCCCCGAGGCCCGG------------------ATCCTCATGGAGAATGCA 1607963 Query 116882 CACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTC 116941 |||||||| ||||| |||| ||||||| | | | || | ||| | Sbjct 1607962 CACTCGGAGATGTACAGCTTGTTCATAGACACGTCCATCAGAGACTCCAGGAAGAGGGAA 1607903 Query 116942 CGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAG-GCCGAGTGGGCGCT 117000 ||| || || || || || || |||| | ||| | ||||| || || ||||| || Sbjct 1607902 TTTTTATTTAATGCGATTGAAACAGTGCCATACGTTAG-GAGAAAAGCAGACTGGGCCCT 1607844 Query 117001 GCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGT 117060 ||| ||||| || |||||| || || | ||||| ||| | |||||||||| || || || Sbjct 1607843 GCGGTGGATAGCAGGCAGAAAGTCCACTTTCGGGGAGAGGGTGGTGGCCTTTGCTGCTGT 1607784 Query 117061 CGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCT 117120 | || || ||||| || || || || || |||| ||||| | |||| Sbjct 1607783 GCAAGGAGTGTTCTTCTCAGG--GT-------CC---TTCTGGCGGAAGAAGGGGAGCCT 1607736 Query 117121 CATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 ||| ||| |||| || | | ||||||||||| | | | |||||||| || || Sbjct 1607735 CATACCCTGCCTCACCTCCGCCAACGAGCTCAGCAGCCGAGACGAGGGACTTCA 1607682 >seq71464 Length=6720225 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| |||| ||||| |||||||| || || |||||||||| || ||| || Sbjct 4556787 GGAGAGCGTGTGGTCGCCTTTGCGGCCGTGGAAGGGATCTTCTTTTCCGGTTCTTTTGCG 4556728 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 |||| || |||||||||||||| || || ||||| ||||| || || |||||| || Sbjct 4556727 TCCATTTTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTTACCTTTTCCAACGAACTT 4556668 Query 117152 ATCTCCAGGGACGAGG 117167 || ||| || |||| Sbjct 4556667 ATTAGCAGAGATGAGG 4556652 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||||||||| | ||||||||||| || |||||||| || ||||| | |||| || Sbjct 4559179 GAACCGCTGCTGAGAGAGAACCCCCGGCGCTTCGTGATCTTTCCCATCGAGTACCATGAT 4559120 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| ||||| || || |||||||| || || ||||| | |||||||| Sbjct 4559119 ATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCTGAGGAGGT 4559067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514737920864800