Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq72916 114 8e-21 seq71171 113 3e-20 seq70448 113 3e-20 >seq72916 Length=12258079 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || ||||| ||||||||||||||||| || |||| Sbjct 7817646 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCT 7817587 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || || |||| ||||||||| || | || ||||||||| Sbjct 7817586 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCT 7817527 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | ||| || || | |||||||| Sbjct 7817526 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTC 7817467 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| ||||| || ||||| |||||||||||| Sbjct 7817466 TTGCCAGTGAGGGTCTTCACGAAGATCTGCATC 7817434 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 |||||||| || | || || ||||| ||||||||||||||||| || | || Sbjct 7817874 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCT 7817815 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || || |||| ||||||||| || | || ||||||||| Sbjct 7817814 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCT 7817755 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | ||| || || | |||||||| Sbjct 7817754 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTC 7817695 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| ||||| || ||||| |||||||||||| Sbjct 7817694 TTGCCAGTGAGGGTCTTCACGAAGATCTGCATC 7817662 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || ||||| ||||||||||||||||| || | || Sbjct 7817418 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCT 7817359 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || || |||| ||||||||| || | || ||||||||| Sbjct 7817358 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCT 7817299 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | ||| || || | |||||||| Sbjct 7817298 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTC 7817239 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || ||||| ||||||||||| Sbjct 7817238 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817207 >seq71171 Length=10874107 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | |||| |||||||| || |||||||| | || ||| | ||| Sbjct 9049407 AGGACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGGAAGAGTGCGGCCATCG 9049348 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||||||| || ||||||| ||||||||| || | || || || || Sbjct 9049347 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 9049288 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | ||| | | || || |||| |||||||| Sbjct 9049287 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 9049228 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||||||||||||||| Sbjct 9049227 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9049196 >seq70448 Length=578665 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | |||| |||||||| || |||||||| || || ||| | || Sbjct 511429 AGGACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGAAAGAGTGCGGCCATCT 511370 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||||||| || ||||||| ||||||||| || | || || || || Sbjct 511369 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 511310 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | ||| | | || || |||| |||||||| Sbjct 511309 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 511250 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||||||||||||||| Sbjct 511249 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 511218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322777755108800