Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq74017 107 2e-18 seq71956 89.7 5e-13 >seq74017 Length=2439271 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | || || ||||||||| | | | || ||| |||| | Sbjct 32537 TTTAAAAATCCGCATCCAAAGTGAAGACATTATCTGTGGTTTCTGCCATTACTGCGAAAC 32596 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| |||||||| ||||| |||| Sbjct 32597 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 32656 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 32657 CCATAAAATCAAAGGGATTTTCTG 32680 >seq71956 Length=2248420 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 15965 TTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTT 16024 || |||| |||||||||||| |||||||| ||||||||||||||||||| || |||||| Sbjct 2136993 TTCTCAAGGAAATTTGTTTTCCCTTCTAAAGAAATATTTTCCATAAAATTGAAGGGATTT 2137052 Query 16025 TTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCT 16084 | || | | || | |||||| |||| || |||| |||||| ||||| | Sbjct 2137053 TCTGCCTGAAAAACCTTTGAGAATCCCAGCTCCATCAGCAATCCATCCGCAACAAACCCG 2137112 Query 16085 ATATACTGTTTCATTAAATCACAGTTCAT 16113 || |||| || || | ||| |||||| Sbjct 2137113 ATGTACTTCTTTATCAGCACACCGTTCAT 2137141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462079955978000