Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq72419 1260 0.0 >seq72419 Length=7657083 Score = 1260 bits (1396), Expect = 0.0 Identities = 1208/1543 (78%), Gaps = 36/1543 (2%) Strand=Plus/Minus Query 107226 TTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCT--TGCCT 107283 |||||| |||| | ||||||||||||| ||||||| |||||||||| | ||| Sbjct 5008627 TTAGTTGGTAACTGGAGGCATTTTGTTCCACCCAAGGAGTCAGTCCTCCACCTCTTCCCT 5008568 Query 107284 GTGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTT 107343 ||| || ||| | | ||| |||||||| | |||||||| || || | Sbjct 5008567 GTGTGCA-------CTGGTTTTGTGTCCTCTGAAGATGATTCCGTGGAAGA-GA--CTCT 5008518 Query 107344 GCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGA 107403 ||||| ||||| |||||| ||||||||| || | | |||| ||| ||||| |||||| Sbjct 5008517 GCCGGCATCATCACATGTGGGTCCTGGGCTGTTACACGGTGCTAGCCATTGTTGCTCTGA 5008458 Query 107404 GACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCC 107463 ||||||| |||||| | || |||||| | ||| | ||||||| |||| ||| | | Sbjct 5008457 GACTTTCGCTCAGGCTGAAGTGTGATTTTGATCAGCTCTATCTGGACTCCAAGGAACTGC 5008398 Query 107464 AGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCA 107523 | ||| |||||||| | || ||||||| ||||| |||||| ||||||| ||| Sbjct 5008397 CCACCCAGTACTGTAGGAATATCTTGTACAGATCCCTGAGGCTGCCCACAAAGAGGTCCG 5008338 Query 107524 TCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACA 107583 | |||||||| |||||||| |||||||||||||||||||| ||||||| | || | | Sbjct 5008337 TTAACTGTTCGGGGATCACCAGAGGGGACCAGGAAGCAGTGATCCAGGCTATTCTGAATA 5008278 Query 107584 ACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCA 107643 ||||||| || | ||| ||||| |||| || | | | | ||| ||| || |||| Sbjct 5008277 ACCTGGAGGTCAGGAAGGAGCGGCAGCCTTTCTCCGATGCTGACTACATCACTATGACCA 5008218 Query 107644 GAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAG 107703 ||||||||||| || |||||| |||||| |||| | |||||| ||||||| | ||||| Sbjct 5008217 GAGACTGTGAGGAATTTAAGGCCAAAAGGAGGTTCGTGCAGTTCTCACTGAGCAGAGAAG 5008158 Query 107704 AGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAAC 107763 || | |||||||| ||||| ||||| |||||||| |||||||| ||||||||||| || Sbjct 5008157 AGTTCGACTTCCCTATTGCATACTCCATGGTGGTTCATGAGAAAATTGAAAACTTCGAGA 5008098 Query 107764 GGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGT 107823 ||||||| ||||| ||||| ||||||||||| |||||||||||||||||||| ||||| Sbjct 5008097 GGCTGCTTCGAGCTGTGTACGCCCCTCAGAATATATACTGTGTCCACGTGGACCAGAAGT 5008038 Query 107824 CCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCA 107883 | ||||| || ||||||||||| |||| ||| || ||| |||||||| |||||||||| Sbjct 5008037 CTCCAGAAACATTCAAAGAGGCAGTCAGGGCGATCGCTTCATGCTTCCCAAATGTCTTCA 5007978 Query 107884 TGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGA 107943 | ||||| ||| |||| || || ||||| |||||||||||||| || ||||| ||||||| Sbjct 5007977 TAGCCAGCAAGCTGGTTCCAGTAGTTTACGCCTCCTGGTCCAGGGTACAAGCCGACCTGA 5007918 Query 107944 ACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCG 108003 |||||||||| |||||| |||||||||| ||||| ||||| ||||| |||||||| || | Sbjct 5007917 ACTGTATGGAGGACTTGTTCCAGAGCTCGGTGCCTTGGAAATACTTGCTGAATACCTGTG 5007858 Query 108004 GGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGG 108063 |||| ||||| || |||||||||||||| |||||||||| |||||| ||||||||||| | Sbjct 5007857 GGACCGACTTTCCTATAAAGACCAATGCTGAGATGGTCCGGGCCCTGAAGATGTTGAATG 5007798 Query 108064 GTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACC 108123 | || |||||||||||||| || |||| | | | |||||||| |||||| |||| | Sbjct 5007797 GGAAAAACAGTATGGAGTCAGAAATACCCAATAAATACAAAAAAATCCGCTGGCAATATC 5007738 Query 108124 GCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATA 108183 ||||| ||||| ||||| ||||| |||| ||||| ||| || ||||| ||| ||| Sbjct 5007737 ACTATGTGGTGAAGAACACATTGTACATCACCAACAAGAAGAAAGATCCTCCACCTAATA 5007678 Query 108184 ATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATG 108243 | | |||||||||| || ||||||||| ||||||| ||||||| ||| || || |||| Sbjct 5007677 ACACAACCATGTTCACCGGCAATGCCTATATTGTGGCTTCTCGAGACTTCGTTCATCATG 5007618 Query 108244 TCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCG 108303 ||||| | ||||| ||||||||| |||| |||| |||| ||||| ||||| || || | Sbjct 5007617 TCTTACAGAACCCCAAATCCCAACAACTGATTGAGTGGGCAAAAGATACCTACAGTCCTG 5007558 Query 108304 ACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCC 108363 | ||||||||||||||||| ||||||||||| | ||||||||||||||| ||| | Sbjct 5007557 ATGAACACCTCTGGGCCACACTTCAGCGTGCCCTTTGGATGCCTGGCTCTTCTCCCTTGC 5007498 Query 108364 ACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACC 108423 ||||||||||| |||||||||||||||| ||||||||||||| |||||||||||| | | Sbjct 5007497 ACCCCAAGTATGACATCTCAGACATGACCTCCATCGCCAGGCTGGTCAAGTGGCAGCAAC 5007438 Query 108424 ACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGG 108483 ||||||||||||||||| |||||| ||||| | || |||||||||||||| | | ||| Sbjct 5007437 ACGAGGGAGATGTCAGCCGGGGGGCACCTTACGGCCCTTGCTCTGGAATCCACCAGCGGG 5007378 Query 108484 CCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGG 108543 |||| ||||| ||||| ||||||||| ||||||| || |||||||||||||| |||| Sbjct 5007377 GTGTCTGTATTTATGGGGCTGGGGACCTGCACTGGATGCTGCAGAACCATCACCTGTTGG 5007318 Query 108544 CAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTAC 108603 | ||||||||||| ||||||||||| ||||| || || |||||||| ||||||||||||| Sbjct 5007317 CCAACAAGTTTGATCCGAGGGTGGACGATAATGTTCTTCAGTGCTTGGAAGAGTACCTAC 5007258 Query 108604 GTCATAAGGCCATCTATGGGACTGAACTTTGA------------------GCTGCACTGT 108645 | || ||||||||||| ||||||| ||| ||| ||||| |||| Sbjct 5007257 GCCACAAGGCCATCTACGGGACTGGACTGTGAGGCACACGACAGACGAGTGCTGC-CTGT 5007199 Query 108646 GGGCCAGGGA-CTGTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACG 108704 ||| |||| | ||||| | || ||| || | |||| || ||||||||| || Sbjct 5007198 GGGGCAGGAAGATGTGC--AAGTG-TCAGAGCCTCCTGGGACAACACGGGGTGGGGAACC 5007142 Query 108705 AGGGCTGTGGAATCCATGGCATCCCCCAGGGTCAGAGGGCTGC 108747 |||||| || |||| ||||| ||||| |||| || | ||||| Sbjct 5007141 AGGGCTCCGGGATCCGTGGCA-CCCCCGGGGTAAGGGTGCTGC 5007100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347951606572020