Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq70384 93.3 3e-14 >seq70384 Length=4945429 Score = 93.3 bits (102), Expect = 3e-14 Identities = 276/426 (65%), Gaps = 0/426 (0%) Strand=Plus/Plus Query 20189 ACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAAT 20248 ||||| || ||| || || ||| || ||||| |||| || || ||||| || || | Sbjct 1455633 ACAGCCTGGGGTTTTCCAGCCATCAGGAAGGGGACCTGGGCCCCGTTTATGGCTTCCAGT 1455692 Query 20249 GGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAG 20308 |||| |||| | ||||| || | ||| | || |||| | || |||||| | | Sbjct 1455693 GGAGGTATTTCAGGGCTGACTACAAAGGCATCGAGTCAGATTACTCGGGTCAAGGAATGG 1455752 Query 20309 ATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTT 20368 | || | || || || || || || ||||| ||||| ||||||| ||| | || Sbjct 1455753 ACCAGCTGCAGAAGGTGATCAACACCATCAAAACCAACCCTGACGACAGGAGACTCATCA 1455812 Query 20369 TATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTAT 20428 | ||| |||||||| | ||||| | ||| | ||||| ||||||| || || || | Sbjct 1455813 TGTGCACCTGGAACCCGAAAGAGCTCCCTCTGATGGCGCTGCCTCCCTGCCACGCCCTCT 1455872 Query 20429 GCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATA 20488 ||| || ||||| | || || ||| || | |||| || | || | || | Sbjct 1455873 ACCAGTTCTACGTGGTGAACTGGGAGCTGTACTGCCCGCTGTACCAGCTCTCTGTGGACA 1455932 Query 20489 TGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCAC 20548 ||| | ||| | || ||||| | | || ||| | ||||| || || || | || | Sbjct 1455933 TGGACCAGGGCCTGCCCTTCAAAGTCTCCAGCTATACCCTGCTCACCTACATAGTCGCTC 1455992 Query 20549 ATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACC 20608 | || | | | || |||||||| || || | ||||| || |||||||||| Sbjct 1455993 CCATCACTGGCCTGCAGACAGGTGACTTCGTACATATTTGGGGAGATGCACATATTTACC 1456052 Query 20609 TTAATC 20614 | |||| Sbjct 1456053 TGAATC 1456058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398820434439850