Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq71464 96.9 3e-15 seq71723 87.8 2e-12 >seq71464 Length=6720225 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| |||||||||||||| ||||| || | || ||||||| ||| ||||| | Sbjct 4556652 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTAAGGCCAGGCATCAGTCCCCGTTTCT 4556711 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| || || | || || || ||||||||||| || || || || || ||||| | Sbjct 4556712 TGAGCCAGAAAATGGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCCGCAAAGG 4556771 Query 14346 C 14346 | Sbjct 4556772 C 4556772 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 ||||| ||| |||| || | |||| ||| || | | | | || || || ||||| | Sbjct 4555465 TAAAAGTCAGCATCCAAAGTAAAAGAATTCTC-TGTAGGACTGGACATGACTCCCATCCT 4555523 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || ||||||||||| || || |||||||| || ||||| || Sbjct 4555524 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGAGAAATATTCTC 4555583 Query 13975 CATAAAATCAAATGGATTT 13993 ||| || ||||| |||||| Sbjct 4555584 CATGAAGTCAAACGGATTT 4555602 >seq71723 Length=19027027 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 11643 TCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCGCC 11702 || || | || |||||||| |||| ||| || | | |||| |||| | ||||| Sbjct 471922 TCCAATCCTTGAACTTCTTCTATTTCTGGGTAATAAATCCGTTCACAAATGAGCTGCGCA 471981 Query 11703 ACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCA 11762 | |||||| ||| |||| | | |||| | | ||| ||| ||||| | | ||| ||| Sbjct 471982 ATTCGATCACCTTTTTTTACTTCAAATTTCTCTTTGCCAAAATTAAACAGGACAACGCCA 472041 Query 11763 ATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11810 | || || ||||||||||||||||| ||||| |||| | ||||||| Sbjct 472042 ACATTTCCTCTATAATCTTCATCTATGACTCCAGCTCCAACATCTATG 472089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481895028916400