Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq73626 129 7e-25 seq72823 123 3e-23 seq71464 105 8e-18 seq74247 98.7 1e-15 seq71723 96.9 4e-15 >seq73626 Length=12063405 Score = 129 bits (142), Expect = 7e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 188465 GAATCTCTAACGCTGGCCTCTGTTGTTACTTTCTATGATGCGCGTATCGTTATACAAGCT 188524 |||||||| || | || ||| ||||| |||||||||| ||| || | || ||| Sbjct 10892021 GAATCTCTGACTGTAGCAGTTGTAGTTACCTTCTATGATGTATATATTATTCTGCAGGCT 10891962 Query 188525 TTCATGTTGACTACTGCAGTGTTTCTTGCTCTGACTACATGTACTCTACAATCAAAGAGA 188584 || || |||||||||| || ||||||| | |||||| || |||||||||||| ||||| Sbjct 10891961 TTTATACTGACTACTGCTGTATTTCTTGGTTTGACTATATATACTCTACAATCCTAGAGA 10891902 Query 188585 GATTTCAGTAAACTTGTAACAGGATTGTTTGCTGCTTTCTGGATTTTAATTTTGTCAGGA 188644 || ||||| ||| ||| | ||| ||| |||||| | ||||||||| |||||||| Sbjct 10891901 GACTTCAGCAAATTTGGATCAGAGTTGCTTGCTGTCCTGTGGATTTTATGCCTGTCAGGA 10891842 Query 188645 GTCTTGAGGAT 188655 | |||| ||| Sbjct 10891841 TTGTTGAAGAT 10891831 >seq72823 Length=4236179 Score = 123 bits (136), Expect = 3e-23 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 488517 ACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 488576 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| ||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 488577 GACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 488636 Query 62508 CTATTTCTAAGACCGTAT 62525 || ||| | | ||| ||| Sbjct 488637 CTGTTTTTTATACCATAT 488654 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||||||||| |||||||| ||||||||||| || | || ||||| || | | || Sbjct 502168 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 502227 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| || Sbjct 502228 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 502287 Query 63387 TCCAAGTATATGGC 63400 |||| ||| || || Sbjct 502288 TCCAGGTAAATAGC 502301 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | ||||||||||| || |||||||| || |||||||| || ||| Sbjct 515051 GTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAACCACTTCTCAGAAAGAAGGTTG 515110 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 ||||| ||||| || | || || || || ||||| || || | || | ||| ||| Sbjct 515111 TACGTTTCAATTGCGGCATCAATGTCTTCTTTGTGAATCCCCACAGATACTCTCATCAAC 515170 Query 63783 ATGTGCTGAGGTCTTTCA 63800 || || || || |||||| Sbjct 515171 ATATGTTGCGGCCTTTCA 515188 >seq71464 Length=6720225 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | |||||| ||||| || || || ||||| || || || || | Sbjct 4556652 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTAAGGCCAGGCATCAGTCCCCGTTTCT 4556711 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || ||||| || || || |||||||||||||| ||||| || || ||||||| Sbjct 4556712 TGAGCCAGAAAATGGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCCGCAAAGG 4556771 Query 33724 C 33724 | Sbjct 4556772 C 4556772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 33291 ||||||||||| |||| |||| |||| ||| ||| || ||||| |||||||| Sbjct 4555463 TTTAAAAGTCAGCATCCAAAGTAAAAGAATTCTCTGTAGGACTGGACATGACTCCCATCC 4555522 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 | || || || || || | || || || || || || || ||||||| || ||||| | Sbjct 4555523 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGAGAAATATTCT 4555582 Query 33352 CCATGAAATCAAACGGATT 33370 ||||||| ||||||||||| Sbjct 4555583 CCATGAAGTCAAACGGATT 4555601 >seq74247 Length=1367747 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 ||||| |||||||||| ||| || | |||||||| || |||||||||| || ||| Sbjct 1278619 GTTACCTTCTATGATGTATATATTATTCTGCAAGCTTTTATACTGACTACTGCTGTATTT 1278560 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || |||||||||||| |||| ||| ||||| ||| ||| | |||| Sbjct 1278559 CTTGGTTTGACTGTATATACTCTACAATCCAAGAAAGACTTCAGCAAATTTGGAGCAGG 1278501 Score = 86.0 bits (94), Expect = 8e-12 Identities = 79/99 (80%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 188241 GCATTTCTAAGAAAAGTCTACGGTATCCT-TGTCTACAATTTCCTTTAACAACGGCAACA 188299 || ||||| |||||||||||| ||||||| | ||||||| | | |||||||| | |||| Sbjct 1285321 GCCTTTCTCAGAAAAGTCTACAGTATCCTGTCTCTACAAGTACTCTTAACAACAGTAACA 1285262 Query 188300 GCTGCAGTATTTTTATACTTTGAATGCATTCGGACATTT 188338 || |||| || ||||||||||| | | ||||||||| Sbjct 1285261 TCTACAGTGTTCTTATACTTTGAGTCTGTACGGACATTT 1285223 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 188173 GCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACA 188232 ||||||| |||||||| ||||||||||| | ||||| ||||| ||||||||| |||||| Sbjct 1293699 GCTCCTCAATCGAGGATGACTTCAACTACGGCAGCTGCGTGGCCTCTGCCAGCCTGCACA 1293640 Query 188233 TACGAATGG 188241 | ||||||| Sbjct 1293639 TCCGAATGG 1293631 Score = 82.4 bits (90), Expect = 1e-10 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437 ||| || | || |||||||| || |||||||| ||||||||||||||||||| || ||| Sbjct 1284160 GGAGCTTTGGGTTTGATTTTTGCGCTGACTTTAAACAGACATAAACATCCCCTTAACCTG 1284101 Query 188438 TACCTACTTTGTGGATTT 188455 ||||| |||| ||| ||| Sbjct 1284100 TACCTGCTTTTTGGCTTT 1284083 >seq71723 Length=19027027 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 31347 TTGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31406 ||| |||||||| | |||||| ||||| || |||| | | || ||||| || |||| ||| Sbjct 471930 TTGAACTTCTTCTATTTCTGGGTAATAAATCCGTTCACAAATGAGCTGCGCAATTCGATC 471989 Query 31407 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31466 || | ||||| | ||| | ||| ||| ||||| || | || || | ||||| Sbjct 471990 ACCTTTTTTTACTTCAAATTTCTCTTTGCCAAAATTAAACAGGACAACGCCAACATTTCC 472049 Query 31467 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAATG-CCTTTTAGG--GACAGACC 31523 ||||||||||| ||||| || || |||| | ||| ||| | || || | || || Sbjct 472050 TCTATAATCTTCATCTATGACTCCAGCTCCAACATCTATGAAGTGTTTGGCAGCCAAGCC 472109 Query 31524 AGACCTAGGAGCTATTCTACCATAGCA 31550 ||| | ||||||| ||| |||||||| Sbjct 472110 AGAACGCGGAGCTACTCTTCCATAGCA 472136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629229271634400