Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq73626 239 6e-58 seq74247 185 1e-41 seq72823 127 3e-24 seq71464 114 2e-20 seq71723 96.9 5e-15 seq74017 93.3 6e-14 >seq73626 Length=12063405 Score = 239 bits (264), Expect = 6e-58 Identities = 293/399 (73%), Gaps = 6/399 (2%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| | | ||||||| || |||||| ||||| | |||||||| ||||| Sbjct 10891628 TTACTTTTTATTAACTTCGTCCAAAAACTATAACAGCTGCAAATATAGATTGATAATATC 10891687 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| |||||| ||||| |||| | || ||| | | ||||| || ||||| Sbjct 10891688 CAAGTAGAGGTTGATACCAGCTAATGCATACTGTTTAGGTGGTAATTTATGCATCAGTGA 10891747 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| ||| | || || ||| |||||| | |||||| ||| | ||| || ||||| Sbjct 10891748 GTG----TCACAAATGATATATCTGCAGAAAAGAAGGGCTCCATCAACAGCCAAGACCAA 10891803 Query 9407 CTCCACTGTTTCACTTTGCACAAATA--TCCTCAAAAGTCCTGACAAAATTAAAATCCAC 9464 | || ||| | | | || | ||| | || |||| | |||||||| |||||||||| Sbjct 10891804 ATTCATTGTCTGATTATGAAAAAAAACATCTTCAACAATCCTGACAGGCATAAAATCCAC 10891863 Query 9465 AAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATAT 9524 | | ||| ||| ||| ||||| ||| ||||| ||||||| ||||||||||||||| Sbjct 10891864 AGGACAGCAAGCAACTCTGATCCAAATTTGCTGAAGTCTCTCTAGGATTGTAGAGTATAT 10891923 Query 9525 GCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACA 9584 ||||| | ||||||| || ||||||||||| || ||||| |||| || | || ||| Sbjct 10891924 ATAGTCAAACCAAGAAATACAGCAGTAGTCAGTATAAAAGCCTGCAGAATAATATATACA 10891983 Query 9585 TCATAGAAAGTAACAACAGAGGCCAGCGTTAGAGATTCC 9623 |||||||| ||||| ||| || | || ||||||||| Sbjct 10891984 TCATAGAAGGTAACTACAACTGCTACAGTCAGAGATTCC 10892022 >seq74247 Length=1367747 Score = 185 bits (204), Expect = 1e-41 Identities = 176/224 (79%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 9211 AATTCTATTTTAAACTTTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGA 9270 ||| || |||| || ||| || |||||| | ||||||||| | | ||||| ||||||| Sbjct 1275753 AATACTGTTTTCAA--TTACTTTTTATTAACTGCTTCCAAAAACCGCAACAGGTGCAAGA 1275810 Query 9271 ACAGATTGATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGA 9330 | |||||||| ||||||||||||| ||||||| | ||| ||||| |||||||| || | Sbjct 1275811 ATAGATTGATAATATCCAAGTAGAGGTTGATAGCAGTTAATACATACTCTTCAGGTGATA 1275870 Query 9331 GCTTATGTATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAA 9390 ||||| || |||||||| |||||||| || || ||||| ||||| | |||||| ||| Sbjct 1275871 CTTTATGCATCAGTGAGTGAGTGTCATAAATGATAAATCCACAGAAAAGAAGGGCTCCAC 1275930 Query 9391 AAGCAGACAGGACCAGCTCCACTGTTTCACTTTGCACAAATATC 9434 ||||| || ||||| ||||| ||| ||||| || | ||| ||| Sbjct 1275931 CAGCAGCCAAGACCAACTCCATTGTCTCACTATGAAAAAACATC 1275974 Score = 131 bits (144), Expect = 2e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 9459 ATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGA 9518 ||||| ||| | | || | |||||||||| ||| ||||| ||| |||| ||||||||| Sbjct 1278480 ATCCAAAAACTTATAACTTACCCTGCTCCAAATTTGCTGAAGTCTTTCTTGGATTGTAGA 1278539 Query 9519 GTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACA 9578 |||||| |||||| | ||||||| || ||||||||||| || |||||||||| || | | Sbjct 1278540 GTATATACAGTCAAACCAAGAAATACAGCAGTAGTCAGTATAAAAGCTTGCAGAATAATA 1278599 Query 9579 TGCACATCATAGAAAGTAAC 9598 | ||||||||||| ||||| Sbjct 1278600 TATACATCATAGAAGGTAAC 1278619 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 9765 TCAAAGTATAAAAATACTGCAGTTGTTGCCGTTGTTAAAAGAAATTGTAGACAAAGGATA 9824 ||||||||||| || |||| || |||| | |||||||| || | ||||||| | |||||| Sbjct 1285239 TCAAAGTATAAGAACACTGTAGATGTTACTGTTGTTAAGAGTACTTGTAGAGACAGGATA 1285298 Query 9825 CCGTAGACTTTTCTTAGAAATGC 9847 | |||||||||||| ||||| || Sbjct 1285299 CTGTAGACTTTTCTGAGAAAGGC 1285321 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| ||||||| |||||||| ||||| ||||||| ||||||||||| ||||||| Sbjct 1293631 CCATTCGGATGTGCAGGCTGGCAGAGGCCACGCAGCTGCCGTAGTTGAAGTCATCCTCGA 1293690 Query 9907 TGGAGGAGC 9915 | ||||||| Sbjct 1293691 TTGAGGAGC 1293699 >seq72823 Length=4236179 Score = 127 bits (140), Expect = 3e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 488517 ACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 488576 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| ||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 488577 GACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 488636 Query 65301 CTATTTCTAAGACCGTAT 65318 || ||| | | ||| ||| Sbjct 488637 CTGTTTTTTATACCATAT 488654 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||||||||| |||||||| ||||||||||| || | || | ||| |||| | || Sbjct 502168 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 502227 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| || Sbjct 502228 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 502287 Query 66180 TCCAAGTATATGGC 66193 |||| ||| || || Sbjct 502288 TCCAGGTAAATAGC 502301 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | ||||||||||| || |||||||| || |||||||| || ||| Sbjct 515051 GTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAACCACTTCTCAGAAAGAAGGTTG 515110 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 ||||| ||||| || | || || || || ||||| || || | || | ||| ||| Sbjct 515111 TACGTTTCAATTGCGGCATCAATGTCTTCTTTGTGAATCCCCACAGATACTCTCATCAAC 515170 Query 66576 ATGTGCTGAGGTCTTTCA 66593 || || || || |||||| Sbjct 515171 ATATGTTGCGGCCTTTCA 515188 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| || ||||||||||| | || || || || || || || || | | Sbjct 521722 CACTGAACACTTTCTTCGTTTCTTTGTGCAAGTTAGACACAGCAATCCTTGCTGCCAAGA 521781 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| |||| Sbjct 521782 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCCA 521841 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || |||||| | || | || ||||| || ||||| Sbjct 521842 GTTCCACTGTGGTGACTCCACTGTACAAGCCCTGGATTACTTTCAT 521887 >seq71464 Length=6720225 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | |||||||||||| || || || ||||| || || || || | Sbjct 4556652 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTAAGGCCAGGCATCAGTCCCCGTTTCT 4556711 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || ||||||||||| || || |||||||| || ||||| || |||||||||| Sbjct 4556712 TGAGCCAGAAAATGGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCCGCAAAGG 4556771 Query 36300 C 36300 | Sbjct 4556772 C 4556772 >seq71723 Length=19027027 Score = 96.9 bits (106), Expect = 5e-15 Identities = 147/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 33948 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 34007 ||| ||||||| | |||||| ||||| || |||| | | || ||||| || |||| ||| Sbjct 471930 TTGAACTTCTTCTATTTCTGGGTAATAAATCCGTTCACAAATGAGCTGCGCAATTCGATC 471989 Query 34008 CCCCGTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 34067 || | ||||| | ||| | ||| ||| ||||| || | || || | |||||| Sbjct 471990 ACCTTTTTTTACTTCAAATTTCTCTTTGCCAAAATTAAACAGGACAACGCCAACATTTCC 472049 Query 34068 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT-ACCTTTTAGG--GACAGACC 34124 ||||||||||| ||||| || || |||| | ||| || | | || || | || || Sbjct 472050 TCTATAATCTTCATCTATGACTCCAGCTCCAACATCTATGAAGTGTTTGGCAGCCAAGCC 472109 Query 34125 AGACCTAGGAGCTATTCTACCATAGCA 34151 ||| | ||||||| ||| |||||||| Sbjct 472110 AGAACGCGGAGCTACTCTTCCATAGCA 472136 >seq74017 Length=2439271 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || || | |||||||| || ||||| || ||||| ||||| | ||| | Sbjct 43649 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCCCTCTTCT 43708 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || |||| || || || || || ||||| | ||||| || |||||||||| Sbjct 43709 TCAGCCAGAAGATGGCGGCGAAGGACCCCGAGAAGAACACGCCTTCCACAGCCGCAAAGG 43768 Query 36300 C 36300 | Sbjct 43769 C 43769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657557984333200