Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq72168 143 2e-29 seq73533 82.4 7e-11 >seq72168 Length=9498425 Score = 143 bits (158), Expect = 2e-29 Identities = 136/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 |||||| |||| |||||||| || || || || |||||||||||||||||||| || || Sbjct 6792501 CAGGCCAGTGATGTGAGCGACCATGTAGGTAAGCAGGGCGTAGCTGGCGATGTTGAAGGG 6792560 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC 21109 || || ||||||||||| |||| | ||||||||||||||||||||||||||| | Sbjct 6792561 CACGCCCAGGCCCATGTCCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCAC 6792620 Query 21110 CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||| || || || || | |||| || ||||| || |||||| | | ||| || Sbjct 6792621 CACATAGAATTGGCAGAGGGCGTGGCAGGGAGGCAGCGCCATCAGAGGGAGATC 6792674 >seq73533 Length=2840070 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/146 (73%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 20958 TCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATAC 21017 || ||||| ||||| |||||| | || || | |||||| | || | |||||| || | Sbjct 2091849 TCTCCCAAAGTGTGTACAAAGCCACCTGGCGGCAGGCCGGCGATGAGAGCGACCATGCAG 2091790 Query 21018 GTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTC 21077 || || ||||||||||||| ||||| || | | || ||| ||| || | | | | Sbjct 2091789 GTGAGCAGGGCGTAGCTGGTGATGTCGAA---GCCACCCAGG-CCACGTTCCCCTAGCGC 2091734 Query 21078 TGGTACAGCTGGCAGGACAGCTCCCC 21103 ||||||||| ||||||| |||||||| Sbjct 2091733 TGGTACAGCCGGCAGGAGAGCTCCCC 2091708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427386393650400