Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq74017 93.3 3e-14 seq71464 84.2 2e-11 >seq74017 Length=2439271 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||||||||| |||||||| | || || ||||| || || ||||| ||||||| Sbjct 43771 TGGCCTTTGCGGCTGTGGAAGGCGTGTTCTTCTCGGGGTCCTTCGCCGCCATCTTCTGGC 43712 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 ||||||| | |||||||| || | | || ||||||||| | || ||| | |||| Sbjct 43711 TGAAGAAGAGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCAGCAGAGACG 43652 Query 22868 A 22868 | Sbjct 43651 A 43651 >seq71464 Length=6720225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 ||||||||||| || ||||| || | ||||| || || |||||| |||| |||||||| Sbjct 4556772 GCCTTTGCGGCCGTGGAAGGGATCTTCTTTTCCGGTTCTTTTGCGTCCATTTTCTGGCTC 4556713 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868 |||||||| || ||||| || | | ||||||||||| | |||||| | || || Sbjct 4556712 AAGAAACGGGGACTGATGCCTGGCCTTACCTTTTCCAACGAACTTATTAGCAGAGATGA 4556654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355909152456190