Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq70448 89.7 5e-13 seq71171 84.2 2e-11 >seq70448 Length=578665 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| ||||||||||| ||||| || || || | |||| ||||| ||||| Sbjct 511421 GTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTG 511362 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || ||| |||| || | ||||| || ||||| ||||||||||| || ||| || Sbjct 511361 CTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTT 511302 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | || || ||||||||||||| | ||| | |||||||| || Sbjct 511301 GGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGT 511242 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || || || || || || ||||| Sbjct 511241 CAGGGTCTTCACAAAGATCTGCAT 511218 >seq71171 Length=10874107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| ||||||||||| ||||| || || || | |||| || || ||||| Sbjct 9049399 GTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGGAAGAGTGCGGCCATCGTCCAGCTG 9049340 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || ||| |||| || | ||||| || ||||| ||||||||||| || ||| || Sbjct 9049339 CTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTT 9049280 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | || || ||||||||||||| | ||| | |||||||| || Sbjct 9049279 GGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGT 9049220 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || || || || || || ||||| Sbjct 9049219 CAGGGTCTTCACAAAGATCTGCAT 9049196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495600614216000