Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq71464 123 4e-23 seq72823 118 2e-21 seq71723 91.5 2e-13 >seq71464 Length=6720225 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| |||||||||||||| || || || ||||| || || || || | Sbjct 4556652 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTAAGGCCAGGCATCAGTCCCCGTTTCT 4556711 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || ||||||||||| || || ||||||||||| ||||| || || ||||||| Sbjct 4556712 TGAGCCAGAAAATGGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCCGCAAAGG 4556771 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 4556772 CGACCACACGCTCTCC 4556787 >seq72823 Length=4236179 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 488517 ACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 488576 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| ||||| || ||||||||||| || || ||||| || || | | |||| Sbjct 488577 GACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 488636 Query 79180 CTATTTCTAAGACCGTAT 79197 || ||| | | ||| ||| Sbjct 488637 CTGTTTTTTATACCATAT 488654 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || ||||| |||| | ||| Sbjct 502168 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 502227 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| || Sbjct 502228 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 502287 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 502288 TCCAGGTAAATAGC 502301 >seq71723 Length=19027027 Score = 91.5 bits (100), Expect = 2e-13 Identities = 173/254 (68%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 47704 CCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTCC 47763 ||||| || ||||| ||| | || || || ||| | || | ||| ||||| || Sbjct 471883 CCAGTGGACCCAAAGCCTCCGGAACCCCTCTCGGTATTGTCCAATCCTTGAACTTCTTCT 471942 Query 47764 AGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTACA 47823 | |||||| ||||| || |||| | | || ||||| || |||| ||| || | ||||| Sbjct 471943 ATTTCTGGGTAATAAATCCGTTCACAAATGAGCTGCGCAATTCGATCACCTTTTTTTACT 472002 Query 47824 TTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTCG 47883 | || | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 472003 TCAAATTTCTCTTTGCCAAAATTAAACAGGACAACGCCAACATTTCCTCTATAATCTTCA 472062 Query 47884 TCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGCT 47940 ||||| || ||| |||| | ||| || | ||| | || ||||| | |||||| Sbjct 472063 TCTATGACTCCAGCTCCAACATCTATGAAGTGTTTGGCAGCCAAGCCAGAACGCGGAGCT 472122 Query 47941 ATTCTACCATAGCA 47954 | ||| |||||||| Sbjct 472123 ACTCTTCCATAGCA 472136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717597847157200