Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq71464 102 8e-17 >seq71464 Length=6720225 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| |||||||||||||| ||||| || | || ||||||| ||| ||||| | Sbjct 4556652 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTAAGGCCAGGCATCAGTCCCCGTTTCT 4556711 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| || || | ||||| || ||||||||||| || || || || || ||||| | Sbjct 4556712 TGAGCCAGAAAATGGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCCGCAAAGG 4556771 Query 14014 C 14014 | Sbjct 4556772 C 4556772 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 ||||| ||| |||| || | |||| ||| || | | | | || || || ||||| | Sbjct 4555465 TAAAAGTCAGCATCCAAAGTAAAAGAATTCTC-TGTAGGACTGGACATGACTCCCATCCT 4555523 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || ||||||||||| || || |||||||| || ||||| || Sbjct 4555524 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGAGAAATATTCTC 4555583 Query 13643 CATAAAATCAAATGGATTT 13661 ||| || ||||| |||||| Sbjct 4555584 CATGAAGTCAAACGGATTT 4555602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479279874082000