Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq72823 123 3e-23 seq71464 120 4e-22 seq71723 100 4e-16 seq74017 84.2 3e-11 >seq72823 Length=4236179 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 488517 ACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 488576 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| ||||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 488577 GACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 488636 Query 71263 CTATTTCTAAGACCAT 71278 || ||| | | ||||| Sbjct 488637 CTGTTTTTTATACCAT 488652 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || ||||| |||| | ||| Sbjct 502168 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 502227 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| || Sbjct 502228 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 502287 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 502288 TCCAGGTAAATAGC 502301 >seq71464 Length=6720225 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | |||||||||||| || || || ||||| || || || || | Sbjct 4556652 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTAAGGCCAGGCATCAGTCCCCGTTTCT 4556711 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || |||||||| || || ||||||||||| ||||| || |||||||||| Sbjct 4556712 TGAGCCAGAAAATGGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCCGCAAAGG 4556771 Query 42207 C 42207 | Sbjct 4556772 C 4556772 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/139 (75%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774 ||||||||||| |||| |||| |||| ||| ||| || ||||| |||||||| Sbjct 4555463 TTTAAAAGTCAGCATCCAAAGTAAAAGAATTCTCTGTAGGACTGGACATGACTCCCATCC 4555522 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 | || || || || || | || || || || || ||||| ||||||| || ||||| | Sbjct 4555523 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGAGAAATATTCT 4555582 Query 41835 CCATGAAATCAAACGGATT 41853 ||||||| ||||||||||| Sbjct 4555583 CCATGAAGTCAAACGGATT 4555601 >seq71723 Length=19027027 Score = 100 bits (110), Expect = 4e-16 Identities = 178/255 (70%), Gaps = 5/255 (2%) Strand=Plus/Plus Query 39799 CCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTCC 39858 ||||| || ||||| ||| | || || || ||| | || | ||| |||||||| Sbjct 471883 CCAGTGGACCCAAAGCCTCCGGAACCCCTCTCGGTATTGTCCAATCCTTGAACTTCTTCT 471942 Query 39859 AGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTACA 39918 | |||||| ||||| || |||| | | || ||||| || |||| ||| || | ||||| Sbjct 471943 ATTTCTGGGTAATAAATCCGTTCACAAATGAGCTGCGCAATTCGATCACCTTTTTTTAC- 472001 Query 39919 TTGAAAGTACATTTT-CCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 39977 || ||| | | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 472002 TTCAAATTTCTCTTTGCCAAAATTAAACAGGACAACGCCAACATTTCCTCTATAATCTTC 472061 Query 39978 GTCTATTACACCGCCTCCTATATCAAT-ACCTTTTAGG--GACAGACCAGACCTAGGAGC 40034 ||||| || || |||| | ||| || | | || || | || ||||| | ||||| Sbjct 472062 ATCTATGACTCCAGCTCCAACATCTATGAAGTGTTTGGCAGCCAAGCCAGAACGCGGAGC 472121 Query 40035 TATTCTACCATAGCA 40049 || ||| |||||||| Sbjct 472122 TACTCTTCCATAGCA 472136 >seq74017 Length=2439271 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || ||||| || ||||| ||||| | ||| | Sbjct 43649 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCCCTCTTCT 43708 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || || || ||||| | ||||| || |||||||||| Sbjct 43709 TCAGCCAGAAGATGGCGGCGAAGGACCCCGAGAAGAACACGCCTTCCACAGCCGCAAAGG 43768 Query 42207 C 42207 | Sbjct 43769 C 43769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670512272094800