Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq70448 187 6e-42 seq71171 179 9e-40 seq71311 123 6e-23 seq72419 105 2e-17 seq72582 84.2 5e-11 >seq70448 Length=578665 Score = 187 bits (206), Expect = 6e-42 Identities = 162/201 (81%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| |||||||||||||| |||||||| ||||| | || ||||| || || || || Sbjct 511414 GTAGACTCTTTCTGAATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 511355 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || |||||||| || |||||||||||||| ||||| || || Sbjct 511354 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 511295 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| || || || ||||| || || || ||||| ||||| || || Sbjct 511294 ACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 511235 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||| Sbjct 511234 TTCACAAAGATCTGCATTTTG 511214 >seq71171 Length=10874107 Score = 179 bits (198), Expect = 9e-40 Identities = 170/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| |||||||||||||| ||||||| ||||| | || || Sbjct 9049408 AAGGACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGGAAGAGTGCGGCCATC 9049349 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || |||||||| || |||||||| || ||||||||||| Sbjct 9049348 GTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATC 9049289 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || ||||| || | |||||| || || || ||||| || || || || Sbjct 9049288 CTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGT 9049229 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||| ||||| || || || ||||| |||||||||||| Sbjct 9049228 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 9049192 >seq71311 Length=7776501 Score = 123 bits (136), Expect = 6e-23 Identities = 150/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGA-TTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAG 104412 ||||| | || || |||||| |||||| | | ||||| | || | || ||||| | Sbjct 2853826 AGATGAAGGGTGGACTTCTTT-TGAATACTGTCATCAGACAAAGCACGTCCATCTTCCAC 2853768 Query 104413 TTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAAT 104472 ||| || |||||||| || ||||| || ||||||||||| |||||||| ||||||| || Sbjct 2853767 TTGCTTACCAGCAAATATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTAGAT 2853708 Query 104473 CTTTGCTTTTACATTTTCTACGGTATCGCTAG-GTTCTACCTCTAGTGTAATAGTCTTAC 104531 ||| | ||||||||||||| ||||| | || |||| |||| || | || ||||| | Sbjct 2853707 CTTGGTCTTTACATTTTCTATAGTATC-CAAGAGTTCAACCTTGAGCATGATGGTCTTCC 2853649 Query 104532 CAGTAAGTGTTTTTACAAA 104550 | ||| ||||||||||| Sbjct 2853648 TTGCAAGGGTTTTTACAAA 2853630 >seq72419 Length=7657083 Score = 105 bits (116), Expect = 2e-17 Identities = 115/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||| |||||||| | |||||||| || |||||||| ||||||||||| |||| ||| Sbjct 721569 CCATCTCCTAGTTGTGTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCTTTCC 721510 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 | |||| |||| || ||||| |||||||| ||||| | ||||| |||| || | Sbjct 721509 TCATCCCTGATCTGGGCCTTTACGTTTTCTACAGTATCCCACGGTTCAGCCTCGAGCATG 721450 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTA--CAAAT 104551 | ||||| || || | ||||||| ||||| Sbjct 721449 TTGGTCTTCCCGATAGGGGTTTTTATGCAAAT 721418 >seq72582 Length=2129515 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/88 (82%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 104404 GTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTT 104463 |||||| ||||| || |||||||| | || || || ||||||||||| ||| |||| || Sbjct 2081922 GTCTTCCAGTTGCTTCCCAGCAAAT-TAAGTCTTTGCTGATCAGGAGGAATTTCTTCCTT 2081980 Query 104464 ATCCTGAATCTTTGCTTTTACATTTTCT 104491 || |||||| || || |||||||||||| Sbjct 2081981 ATTCTGAATGTTGGCCTTTACATTTTCT 2082008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150295961218840