Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq74100 122 8e-23 >seq74100 Length=5970089 Score = 122 bits (134), Expect = 8e-23 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 |||||||| || ||||| || | || |||||||| ||||||||| ||| ||||||||| Sbjct 1893980 GGCTACCTGGGCTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGTGGAGGTGATG 1893921 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || ||||||| ||||||| || | || | |||||||| ||||| ||||| || ||| Sbjct 1893920 CCCAAGGCGGAGAATCACGACCCCAGCGTCCAGGAGCACGTGAACTCCCTGGGGGAGAAG 1893861 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || || || || ||||| ||||| Sbjct 1893860 CTGAAGACTCTCCGGCTGCGGCTGCGACGCTG 1893829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447332145157600