Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq70384 143 2e-29 seq72168 105 5e-18 >seq70384 Length=4945429 Score = 143 bits (158), Expect = 2e-29 Identities = 363/543 (67%), Gaps = 17/543 (3%) Strand=Plus/Minus Query 25429 GTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTT 25488 ||| | || ||| |||||| | || || |||||| | | || || || || || | | Sbjct 1456067 GTTTTCCGCGATTCAGGTAAATATGTGCATCTCCCCAAATATGTACGAAGTCACCTGTCT 1456008 Query 25489 CTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGG 25548 || || || | | ||| | ||||| ||||| || ||||||| || || |||| Sbjct 1456007 GCAGGCCAGTGATGGGAGCGACTATGTAGGTGAGCAGGGTATAGCTGGAGACTTTGAAGG 1455948 Query 25549 GTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCG 25608 | | || |||||||| | || |||||| ||| | || | ||||| || Sbjct 1455947 GCAGGCCCTGGTCCATGTCCACA-GAGAGCTGGTACAGCGGGCAGTACAGCTCCCAGTTC 1455889 Query 25609 CTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTA 25668 |||||| ||||| | | || || ||| ||||| || || || || | ||||| Sbjct 1455888 ACCACGTAGAACTGGTAGAGGGCGTGGCAGGGAGGCAGCGCCATCAGAGGGAGCTCTTTC 1455829 Query 25669 GGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAA----GATC 25724 |||||||||| ||||| ||||| | |||||| || |||||| |||| |||| Sbjct 1455828 GGGTTCCAGGTGCACATGATGAGTCTCCTGTCGTCAGGGTTGGTTTTGATGGTGTTGATC 1455769 Query 25725 CGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTA 25784 | || |||||||| |||| || |||||||| |||| | ||| | |||| Sbjct 1455768 ACC----TTCTGCAGCTGGTCCATTCCTTGACCCGAGTAATCTGACTCGATGCCTTTGTA 1455713 Query 25785 CTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCT 25844 || || | |||||||||||||||||| || || || || || ||||| || || | | Sbjct 1455712 GTCAGCCCTGAAATACCTCCACTGGAAGCCATAAACGGGGCCCAGGTCCCCTTCCT-GAT 1455654 Query 25845 GTGCT--CAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTT 25902 | ||| ||| ||| | | || ||||||| || | |||| ||||||||||| Sbjct 1455653 G-GCTGGAAAACCCCAGGCTGTTCAGGAAGTCTC-AGACCTGCTGGCATCCCAGATCTTC 1455596 Query 25903 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 25962 | |||| | | |||| ||||||| ||||| | || ||| ||||||||||||||| Sbjct 1455595 ATGCCCT--TAGAAGAGTTCTTTGG-CATTGTGCATCCCTTGATAAACCACAGCAGCTCC 1455539 Query 25963 GCC 25965 || Sbjct 1455538 TCC 1455536 >seq72168 Length=9498425 Score = 105 bits (116), Expect = 5e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| || || || |||| |||||||||||| || || || ||||| ||||| Sbjct 6796797 CATATCTTTGTAGTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACGGGTCCCAGGTC 6796856 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || | | | ||| ||| | ||||| ||||||| ||| || ||||| || Sbjct 6796857 CCCTTCCTGGCGGCTGGAAAACCCCAGGCTGTCCAAGAAGTCTCGGGACCCGTTGGCATC 6796916 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||||| || ||||| || || ||||||| |||||||||||| Sbjct 6796917 CCAGATCTTCACACCCTTGGAAGACAGTTCTTTGGCGTTTGTGGACCC 6796964 Score = 87.8 bits (96), Expect = 1e-12 Identities = 119/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || || | || ||| | |||||| || || || ||||||||||||||| ||||| Sbjct 6792502 AGGCCAGTGATGTGAGCGACCATGTAGGTAAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 6792561 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || | ||||||| |||| || | |||||| ||||| || || ||||| ||| Sbjct 6792562 ACGCCCAGGCCCATGT-CCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCAC 6792620 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 ||| || || || || | || || ||| ||||| || || || || Sbjct 6792621 CACATAGAATTGGCAGAGGGCGTGGCAGGGAGGCAGCGCCATCAG 6792665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339827812240290