Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq72024 96.9 4e-15 >seq72024 Length=3748736 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 164502 AGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATT 164561 ||| ||||||||| | ||||| || | ||| |||| || || ||||| |||||||| | Sbjct 1704597 AGGTTGTAAACATGTTAAAGGCATCCTGTTATATGGGCCCCCAGGTTGTGGTAAAACTCT 1704538 Query 164562 AATGGCTCGATGCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAATGG 164618 |||||||| |||| | ||| | || ||| | || || ||| | || ||||| Sbjct 1704537 CTTGGCTCGACAGATTGGT-AAGATGTTGAATGCAAGAGAGCCC--AAAGTGGTCAATGG 1704481 Query 164619 TCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCA 164678 || ||| | | ||||||||||| ||||| ||||| ||||| || | || | ||| Sbjct 1704480 GCCAGAAATCCTTAACAAATATGTGGGTGAATCAGAGGCTAACATTCGCAAACTTTTTGC 1704421 Query 164679 GGAGGCTGAAGAAGAACAAAAGA 164701 || |||||||| ||||||| || Sbjct 1704420 TGATGCTGAAGAGGAACAAAGGA 1704398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595315381068000