Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq74100 136 4e-27 >seq74100 Length=5970089 Score = 136 bits (150), Expect = 4e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 ||||||||||||| || || ||| |||| || ||||||||||||||||||| ||| || | Sbjct 1893982 AGGGCTACCTGGGCTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGTGGAGGTGA 1893923 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||| || ||||| |||||| || | | |||||||||||||| ||||| |||| Sbjct 1893922 TGCCCAAGGCGGAGAATCACGACCCCAGCGTCCAGGAGCACGTGAACTCCCTGGGGGAGA 1893863 Query 10260 ATCTAAAGACCCTAAGGCTTCGCTTGCG 10287 | || ||||| || |||| || |||| Sbjct 1893862 AGCTGAAGACTCTCCGGCTGCGGCTGCG 1893835 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| || ||||||||||||||||| |||||||| || || ||||| | Sbjct 1891981 AGCTCCAAGAGAAAGGTGTGTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 1891922 Query 10419 TAGAAGCATACATGAC 10434 |||||| |||||||| Sbjct 1891921 TAGAAGTCTACATGAC 1891906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546867879404800