Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq71882 194 2e-44 seq72798 104 3e-17 >seq71882 Length=3594170 Score = 194 bits (214), Expect = 2e-44 Identities = 233/317 (74%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 8659 GAGCTCCTTATTGGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGAC 8718 |||||| || |||||| | ||||| | || ||||| || || ||||| | |||| Sbjct 2487677 GAGCTCTGCATCGGGAACACTGAACGACGTGAAAGGACAGCCCTTCACGTTAGTGCAGAT 2487618 Query 8719 TAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCT 8778 ||||||||||| | || | |||| |||| ||| || || ||||| || || || || Sbjct 2487617 GAGAGACTGGATGGAGGCGGTGTTGATGATCTGAAAACCTACTTCTCCTCCAAAAGTACT 2487558 Query 8779 GGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGG 8838 || |||||||| ||| ||||| ||| ||| ||||||| ||||| | ||| || || Sbjct 2487557 CGGCTTCCAGTACTGCGGCGAGCATATGGGGTTACCCATGAGTCCTTTCAAGGAGAAGGG 2487498 Query 8839 AGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8898 ||| |||| || | ||| |||| |||||||| |||| || || ||||||||||||| Sbjct 2487497 AGCTCCCATTTCCACCATGGTCTCCCCGAAGATAGCGTCTGGCCGAGGCTTTTCCACCAG 2487438 Query 8899 GAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGC 8958 || ||| |||| ||||| ||| |||||||||||||| ||| | | || ||||| Sbjct 2487437 GAGGGCGGGATACAGCTCCATAGCGTCGATGTCTCCGTAGAGGCCTTCCAACTCTGCAGC 2487378 Query 8959 GATTTCCTTTTCTCCTG 8975 |||||||| ||||||| Sbjct 2487377 TATTTCCTTCTCTCCTG 2487361 Score = 165 bits (182), Expect = 1e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| ||||| | |||||| ||| || ||||| || ||| | || ||||||||||| Sbjct 2485923 GTCTGGAACAGGCGCTCGTCATCCCACTCCGGATGCTCCCGTCTGAGCACATCGCACACC 2485864 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 |||||||| |||| |||||||| || ||||||||||| ||||| ||||||||||| || Sbjct 2485863 CTGTTGTGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGACCGGGCACCAGGCCGAAG 2485804 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || || || | |||| | || || | ||| || |||||||| ||| Sbjct 2485803 ACCTCCTGGCCCACCGCGAAGCGCAGGTGCTCAGGGGTGTGGGGTGGGTAGATCATCTGC 2485744 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 |||||| |||||||| || || || ||||| || |||||||| Sbjct 2485743 ACCTGGGTGTCTTTGACTGACGGAGGGTACATCTCTCCGTCAAT 2485700 Score = 96.9 bits (106), Expect = 5e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| |||||| | ||||| || || || ||| | ||| | | | ||| Sbjct 2484645 CTTACCCCATGGGACAGTCCAGTGGTGAAAGCAGGTCCACGCTTCGGATCTGACTTGAAA 2484586 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||| || ||||| || ||| |||| ||||||||||| | || ||||| ||||| || Sbjct 2484585 AACTGATGGGTGAAGTGCTGGGCAAAGAAGGCAAACATCATATTTGTGCCTTGGGGGTCA 2484526 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 || |||| | || | |||||| |||||||| ||| Sbjct 2484525 GGGATGAACTTTCTTCTTAGAAGAACTTTTTCCAGAAC 2484488 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | ||||| || || || | | || ||||| || | | | | Sbjct 2484117 TCACCTTTCACACCCATGGGAGTGGGGCAGTCATCGGCCACAGGAGGGAGGACTCGGGTG 2484058 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || |||||||| || ||||| |||||||||||| ||| | |||||| |||||| | Sbjct 2484057 TAGTAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCAAAGTCCGAGTTGTAAGTT 2483998 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 ||||| ||||||| ||||| ||||| ||||| Sbjct 2483997 GGAGGACTGTCAACCAAATGTGATCTGGCTGAA 2483965 Score = 89.7 bits (98), Expect = 7e-13 Identities = 182/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| || ||||| ||||| || || || | |||||||| ||||| | Sbjct 2486450 CTTACCCTGCCAGCAATCTGTTTGGTGAATGACTCAACAAACTGGGTAAGTCCGTGTTCC 2486391 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTA-GTCATACTTTGTTTTATCAATCTC 9440 | | || || |||||||| | ||| | || | || |||| | | || || | Sbjct 2486390 ACTAACATAGAGTTGTTGTAGA-GAAACTGCTGAAAGTTGTACTCTTGGTCATGGATTTG 2486332 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 ||| | || |||| || | ||||||||| || | | |||||||||| ||| || || Sbjct 2486331 AAAGGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGAAGCAATGCG 2486272 Query 9501 ATTTTGGTACTGGAACGAAGT--ACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAG 9558 || ||||||||||| | || ||| ||||| || || | |||| || | ||| Sbjct 2486271 GTTCTGGTACTGGAA--ATGTTGGTTAAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAG 2486214 Query 9559 TGGTAGCCGCTGAGCTGCTGAACATA 9584 || || ||||| | ||||| ||||| Sbjct 2486213 TGATAACCGCTCAAGTGCTGTACATA 2486188 >seq72798 Length=3738091 Score = 104 bits (114), Expect = 3e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 ||||| || | || |||| || || || || ||||| || |||||||| | || || Sbjct 3636580 TTGACAATGCTGAAGCCCATCTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAA 3636521 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| | | ||| || ||||||||||| |||||||| | ||| | || ||| Sbjct 3636520 CAGATGGGATTCCCTAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATCTCAATCATACTC 3636461 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || |||||||||| ||| || || ||||| | | || || | ||| ||||| | Sbjct 3636460 TCCCCGAAGATGGAGTTTGGTAGGCATTTTTCAAGAAGCAACCCTGGGTAAAACTCTAAG 3636401 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||||||||| || | || | || || || || ||||| || |||| Sbjct 3636400 GCATTGATGTCTCCATATAACTCCTCCAACTCAGCTGCCATCTCCTTGTCCCCTG 3636346 Score = 100 bits (110), Expect = 4e-16 Identities = 112/148 (76%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || ||||||||||| |||| | || |||||| | || || || |||| | |||| Sbjct 3626747 GTACTTACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTCT 3626690 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 | || |||||||| ||||| ||||| |||| ||||||||||| | ||| ||||| |||| Sbjct 3626689 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTTGTGCCTTGGG 3626630 Query 10144 GATCGGGAGTGAAGGTCCTCCGAAGAAG 10171 |||| || |||| |||||| ||||| Sbjct 3626629 GATCAGGGATGAACTTCCTCCTGAGAAG 3626602 Score = 100 bits (110), Expect = 4e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| || ||||||||||| || |||||||| ||| ||||| Sbjct 3628857 TCACCTATCAGGATGAGGCGGGTGGTCTGAAAGAGCTGTTCGTCTTCCCAGGTGGGATGC 3628798 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| ||||| | || ||||| | |||||| || | ||||||| || ||||| | | Sbjct 3628797 TCTGCCTTCAGCAGGTCACACACACGGTTGTGCTCACGCAGCCAGAGTGTGGCGTAGAGC 3628738 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9772 ||||| || |||| ||| ||||| ||||||| || || |||| Sbjct 3628737 ATGAGCCCCGGCAGCAGCCCAAACACCTCTTGGCCCACGGCCA 3628695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707862949271200