Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq74628 138 2e-28 seq71208 134 2e-27 seq71956 129 9e-26 seq72138 111 2e-20 >seq74628 Length=2197503 Score = 138 bits (152), Expect = 2e-28 Identities = 178/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||| ||||| |||| | || || || || |||||||| || ||||| || || || || Sbjct 138076 GCTAAACGTCACCGCAAGGTC-CTACGGGACAACATCCAGGGTATCACAAAACCCGCGAT 138134 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| || || ||||| || || ||||| |||| || | |||| || |||| Sbjct 138135 TCGGCGTCTCGCCCGCCGTGGCGGCGTTAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 138194 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || |||||| | ||||| ||| ||| |||| || ||| || ||| ||||| Sbjct 138195 TCGGGGCGTGTTGAAGGTGTTCCTGGAGAACGTCATCCGCGACGCTGTCACCTACACCGA 138254 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | || || || | || || || || Sbjct 138255 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGG 138314 Query 16672 CCG 16674 ||| Sbjct 138315 CCG 138317 >seq71208 Length=22231620 Score = 134 bits (148), Expect = 2e-27 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||||||||| |||||||| || ||||| || || || Sbjct 3638 CTGCGCGATAACATCCAGGGCATCACCAAGCCCGCTATCCGCCGCCTGGCCCGGCGCGGC 3579 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| ||| | || ||||| ||||| Sbjct 3578 GGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACTCGCGGGGTGCTGAAGGTCTTC 3519 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| || |||||||| || || ||||| ||| Sbjct 3518 CTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACGGTC 3459 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | ||||| || | || || || || || | | | || || || || Sbjct 3458 ACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGACGCACGCTCTACGGCTTCGG 3400 Score = 129 bits (142), Expect = 9e-26 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||||||||| |||||||| || ||||| || || || Sbjct 262461 CTGCGCGATAACATCCAGGGCATCACCAAGCCCGCTATCCGCCGCCTGGCCCGGCGCGGC 262402 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| ||| | || ||||| ||||| Sbjct 262401 GGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACTCGCGGGGTGCTGAAGGTCTTC 262342 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| || |||||||| || || ||||| ||| Sbjct 262341 CTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACGGTC 262282 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | ||||| || | || || || || || | | | || || || || Sbjct 262281 ACGGCTATGGACGTGGTCTACGCGCTCAAGCGCCAGGGACGCACGCTCTACGGCTTCGG 262223 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || ||||||||||| || || Sbjct 21965131 CGCCAAGCGCCACCGCAAGGTTCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 21965190 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | || || ||||| ||||| |||| || | |||| || |||| Sbjct 21965191 CCGCCGCCTGGCCAGGCGCGGCGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 21965250 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| || | ||| || || ||| || || Sbjct 21965251 GCGCGGGGTGCTGAAGGTCTTCCTGGAGAACGTGATTCGTGACGCCGTCACCTACACGGA 21965310 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 21965311 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 21965370 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 21965371 ACGCACGCTCTACGGCTTCGG 21965391 Score = 129 bits (142), Expect = 9e-26 Identities = 190/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || ||||||||||| || || Sbjct 21970034 CGCCAAGCGCCACCGCAAGGTTCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 21969975 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | || || || || ||||| |||| || | |||| || |||| Sbjct 21969974 CCGCCGCCTGGCCCTGCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 21969915 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| | || || || || ||| || || Sbjct 21969914 GCGCGGGGTGCTGAAGGTCTTCCTGGAGAACGTGACCCGCGACGCCGTCACCTACACGGA 21969855 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | |||||||| | || || || || Sbjct 21969854 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTATGCGCTCAAGCGCCAGGG 21969795 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | | || ||||| || | |||| Sbjct 21969794 ACGCACGCTCTACGGTTTCGGGGGCTAAT 21969766 Score = 122 bits (134), Expect = 1e-23 Identities = 193/277 (70%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 21815670 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 21815611 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | || || || || ||||| |||| || | |||| || |||| Sbjct 21815610 CCGCCGCCTGGCCAGGCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 21815551 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 21815550 GCGCGGGGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 21815491 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 21815490 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 21815431 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAAT 16708 || | | | || || || || | ||| || |||| Sbjct 21815430 ACGCACGCTCTACGGCTTCGGGGGCTAAACTCTTAAT 21815394 Score = 120 bits (132), Expect = 5e-23 Identities = 183/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 21870763 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 21870822 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | || || || || ||||| |||| || | |||| || |||| Sbjct 21870823 CCGCCGCCTGGCCAGGCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 21870882 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 21870883 GCGCGGGGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 21870942 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 21870943 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 21871002 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 21871003 ACGCACGCTCTACGGCTTCGG 21871023 Score = 87.8 bits (96), Expect = 3e-13 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16475 ATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGA 16534 |||| |||||| | |||| || ||||| | | | | ||||||| ||||||| Sbjct 21950745 ATCAACAAGCCCACCATCCACCGCCTGGCCCAGGGCAGCGATATCAAGCGCATCTCTGGC 21950804 Query 16535 TTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594 | |||| || ||||| || | || |||| ||||||| ||| || |||| || Sbjct 21950805 CTCATCTAGGAGGAGATGCGCGGGGTGCTGAAAGTCTTCCTGGAGAATGTGATCCGCAAT 21950864 Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 || || ||| || |||||||| || || || || ||||| ||||||| || |||||| Sbjct 21950865 GCCGTCACCTACACGGAGCACGCAAAGCGCAACACAGTCACGGCCATGGACATGGTCTAT 21950924 Query 16655 GCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | || | || || || | | | ||||||||||| Sbjct 21950925 GCGCTCAAGAGCCAGGGACGCATGCTCTATGGTTTTGG 21950962 >seq71956 Length=2248420 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 25250 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 25191 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 25190 CCGCCGCCTGGCCCGGCGCGGCGGTGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 25131 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 25130 TCGCGGGGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 25071 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 25070 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 25011 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 25010 ACGCACGCTGTACGGCTTCGG 24990 >seq72138 Length=2629709 Score = 111 bits (122), Expect = 2e-20 Identities = 172/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || || | | |||| || || |||||||| || || || ||||| || || Sbjct 1957594 GCTAAGCGCCACCGGA-AGGTCTTGCGGGACAACATCCAGGGCATTACAAAGCCTGCAAT 1957536 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| || || || || ||||||||||| | || || | | || || |||| Sbjct 1957535 TCGCCGTCTTGCCCGCCGCGGGGGAGTCAAGCGCATTTCCGGGCTCATTTACGAGGAGAC 1957476 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| || |||| || || | ||| ||||| Sbjct 1957475 CCGAGGAGTGCTCAAGGTGTTCCTGGAGAATGTGATCCGCGACGCGGTGACCTACACCGA 1957416 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| |||||||| | || ||||| | ||||| || || Sbjct 1957415 GCACGCCAAGCGCAAGACCGTCACGGCCATGGATGTGGTGTATGCGCTCAAACGCCAGGG 1957356 Query 16672 CCG 16674 ||| Sbjct 1957355 CCG 1957353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79006873837890