Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq72823 127 3e-24 seq71464 111 2e-19 seq71723 96.9 4e-15 >seq72823 Length=4236179 Score = 127 bits (140), Expect = 3e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 488517 ACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 488576 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| ||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 488577 GACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 488636 Query 62457 CTATTTCTAAGACCGTAT 62474 || ||| | | ||| ||| Sbjct 488637 CTGTTTTTTATACCATAT 488654 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 ||||||||||| |||||||| ||||||||||| || | || ||||| |||| | || Sbjct 502168 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 502227 Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| || Sbjct 502228 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 502287 Query 63336 TCCAAGTATATGGC 63349 |||| ||| || || Sbjct 502288 TCCAGGTAAATAGC 502301 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | ||||||||||| || |||||||| || |||||||| || ||| Sbjct 515051 GTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAACCACTTCTCAGAAAGAAGGTTG 515110 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 ||||| ||||| || | || || || || ||||| || || | || | ||| ||| Sbjct 515111 TACGTTTCAATTGCGGCATCAATGTCTTCTTTGTGAATCCCCACAGATACTCTCATCAAC 515170 Query 63732 ATGTGCTGAGGTCTTTCA 63749 || || || || |||||| Sbjct 515171 ATATGTTGCGGCCTTTCA 515188 >seq71464 Length=6720225 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| |||||||||||||| || || || ||||| || || || || | Sbjct 4556652 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTAAGGCCAGGCATCAGTCCCCGTTTCT 4556711 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || ||||| || || || || ||||||||||| ||||| || || ||||||| Sbjct 4556712 TGAGCCAGAAAATGGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCCGCAAAGG 4556771 Query 33446 C 33446 | Sbjct 4556772 C 4556772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 33013 ||||||||||| |||| |||| |||| ||| ||| || ||||| |||||||| Sbjct 4555463 TTTAAAAGTCAGCATCCAAAGTAAAAGAATTCTCTGTAGGACTGGACATGACTCCCATCC 4555522 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 | || || || || || | || || || || || || || ||||||| || ||||| | Sbjct 4555523 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGAGAAATATTCT 4555582 Query 33074 CCATGAAATCAAACGGATT 33092 ||||||| ||||||||||| Sbjct 4555583 CCATGAAGTCAAACGGATT 4555601 >seq71723 Length=19027027 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 31095 TTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31154 ||| |||||||| | |||||| ||||| || |||| | | || ||||| || |||| ||| Sbjct 471930 TTGAACTTCTTCTATTTCTGGGTAATAAATCCGTTCACAAATGAGCTGCGCAATTCGATC 471989 Query 31155 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31214 || | ||||| | ||| | ||| ||| ||||| || | || || | ||||| Sbjct 471990 ACCTTTTTTTACTTCAAATTTCTCTTTGCCAAAATTAAACAGGACAACGCCAACATTTCC 472049 Query 31215 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAATG-CCTTTTAGG--GACAGACC 31271 ||||||||||| ||||| || || |||| | ||| ||| | || || | || || Sbjct 472050 TCTATAATCTTCATCTATGACTCCAGCTCCAACATCTATGAAGTGTTTGGCAGCCAAGCC 472109 Query 31272 AGACCTAGGAGCTATTCTACCATAGCA 31298 ||| | ||||||| ||| |||||||| Sbjct 472110 AGAACGCGGAGCTACTCTTCCATAGCA 472136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622365289446800