Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq72823 91.5 4e-13 >seq72823 Length=4236179 Score = 91.5 bits (100), Expect = 4e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| | || |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 500964 GCTCAGCAACTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGCACCCCATACATG 500905 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||| ||| |||| || ||||| | Sbjct 500904 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAACAGAACCTGGGGACAATCAAATGC 500845 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || || ||| Sbjct 500844 AGCAACCTGTGCACAGAAATAGTAGAGTATACC 500812 Score = 86.0 bits (94), Expect = 2e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || |||||| ||| || || |||||||||||||| | Sbjct 502310 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGACATCTTTGAGTTTCTTGATTTA 502251 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| ||||| || || |||||| | ||||| |||| ||| |||||| || Sbjct 502250 AAGAAGAACACAGGAAAGGAAGAGCAGCGTGCCAGGGATCTTTTCTTTGCCCTTTGGATT 502191 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || ||||| || || ||| Sbjct 502190 CCGGATCTCTTCATGAAACGAGTCGAG 502164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302105667438860