Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq70448 86.0 5e-12 seq72916 82.4 7e-11 >seq70448 Length=578665 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | ||||| || || | ||||| || | || ||| | || || ||| | Sbjct 511214 CAAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCC 511273 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || || ||||| ||| | || || ||||| || ||||||||||| ||||| || Sbjct 511274 CAGTGATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGA 511333 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| || || | | |||||||| || ||||||| | | | | || || Sbjct 511334 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTA 511393 Query 24167 TAACATTCAAAAAGAATCTACAATTCA 24193 || ||||| ||||| ||||| |||| Sbjct 511394 CAATATTCAGAAAGAGTCTACTCTTCA 511420 >seq72916 Length=12258079 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | ||||| || | || ||| |||| || || ||| Sbjct 7817206 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAACCCAG 7817265 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | ||||| ||||| ||||| || ||||| ||||| || || Sbjct 7817266 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCTGACCA 7817325 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||| | | |||||||| || ||||||| Sbjct 7817326 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATG 7817363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544426383150