Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq71464 84.2 2e-11 >seq71464 Length=6720225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || ||||| | ||| |||||||||||||| | || ||||| ||||||||| Sbjct 4557895 ATGTAAGTGTCGATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 4557954 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || || |||||||| | ||||| || || || |||||||| Sbjct 4557955 AAGCCATAGAAACAGCGGGCTTCTGTAATTTGAACTTCTTG 4557995 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | |||||| |||||||||||||| || || || |||||| ||| ||||| || Sbjct 4556690 CCAGGCATCAGTCCCCGTTTCTTGAGCCAGAAAATGGACGCAAAAGAACCGGAAAAGAAG 4556749 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 || ||||||||||| ||||| || || | ||| || Sbjct 4556750 ATCCCTTCCACGGCCGCAAAGGCGACCACACGCTC 4556784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556340622405200