Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq72916 102 7e-17 seq71613 89.7 4e-13 seq71820 86.0 5e-12 >seq72916 Length=12258079 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| || || |||||| ||| Sbjct 7817662 GATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAACCCAG 7817721 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| || || |||||||||||||| || || || || || Sbjct 7817722 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCTGACCA 7817781 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||| ||||| ||| | || ||| ||||| | ||||| ||||| Sbjct 7817782 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCCGACTACAA 7817841 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || || || |||||| | ||| | || | || || | |||||| Sbjct 7817842 CATCCAGAAGGAGTCCACCCTGCATCTGGTGCTCCGTCTGAGGGGAGGT 7817890 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || |||||| ||| Sbjct 7817207 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAACCCAGT 7817266 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||||||||| || || || || || Sbjct 7817267 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCTGACCAG 7817326 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| ||||| | ||||| |||||| Sbjct 7817327 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCCGACTACAAC 7817386 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 7817387 ATCCAGAAGGAGTCCACC 7817404 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| || || |||||| ||| Sbjct 7817434 GATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAACCCAG 7817493 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| || || |||||||||||||| || || || || || Sbjct 7817494 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCTGACCA 7817553 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||| ||||| ||| | || || ||||| | ||||| ||||| Sbjct 7817554 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCCGACTACAA 7817613 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || |||||| Sbjct 7817614 CATCCAGAAGGAGTCCACC 7817632 >seq71613 Length=5741294 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/127 (77%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 22292 ATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATAT 22351 || ||||| ||||||||||||| ||||||| |||| || || || | || || |||| Sbjct 280145 ATGTCAAAGCCAAAATTCAAGACAGGGAGGGTGTTCCCCCAGACCAGCTGCG-CTGATAT 280087 Query 22352 TTGCCGGCAAACAGTTAGAGGATCACCG--CACCGTCTCCGATTACAACATTCAAAAAGA 22409 ||||| |||||||| | ||||| | ||| | | ||||| || | |||||| || ||||| Sbjct 280086 TTGCCAGCAAACAGCTGGAGGA-CGCCGGACTCTGTCTCTGACTGCAACATCCAGAAAGA 280028 Query 22410 ATCCACC 22416 |||||| Sbjct 280027 GTCCACC 280021 >seq71820 Length=8892586 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/125 (76%), Gaps = 5/125 (4%) Strand=Plus/Plus Query 22292 ATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATAT 22351 || ||||| ||||| ||||||||| |||| || |||| || | || | ||| |||| Sbjct 3816775 ATGTCAAAGCCAAAATCCAAGACAAGAAGGGCATCCCACTTGACTAGCA-CATCTGATAT 3816833 Query 22352 TTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAAT 22411 ||||| |||||||| |||||||| | | || || ||||||||||| ||| |||| | Sbjct 3816834 TTGCCAGCAAACAGCTAGAGGATGGCTGGAC----TCTGATTACAACATCCAAGAAGAGT 3816889 Query 22412 CCACC 22416 ||||| Sbjct 3816890 CCACC 3816894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419345723542450