Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq72916 176 8e-39 seq71820 120 6e-22 >seq72916 Length=12258079 Score = 176 bits (194), Expect = 8e-39 Identities = 162/205 (79%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || |||||||| || |||||||| || ||||| || || | ||||||||| | ||| Sbjct 7817410 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCTTCCAGCTG 7817351 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || || || ||||| || || ||||| ||||||||||| ||||| Sbjct 7817350 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATCTT 7817291 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||||||| |||||||||||| | ||| || || | ||||||||| || || || Sbjct 7817290 GGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGT 7817231 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 ||||||||| ||||| ||||||||| Sbjct 7817230 GAGGGTCTTCACGAAGATCTGCATT 7817206 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || || | |||| || || |||||||| || |||||||| || ||||| Sbjct 7817889 CCTCCCCTCAGACGGAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 7817830 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| || || || || || || || ||||| || || Sbjct 7817829 AGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 7817770 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| |||||||| |||||||||||| | ||| || Sbjct 7817769 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACC 7817710 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||| ||||| |||||||| Sbjct 7817709 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817663 Score = 170 bits (188), Expect = 4e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || |||||||| || |||||||| || ||||| || || | ||| ||||| | ||| Sbjct 7817638 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCTTCCAGCTG 7817579 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || || || ||||| || || ||||| ||||||||||| ||||| Sbjct 7817578 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATCTT 7817519 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||||||| |||||||||||| | ||| || || | ||||||||| || || || Sbjct 7817518 GGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGT 7817459 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 ||||||||| ||||| |||||||| Sbjct 7817458 GAGGGTCTTCACGAAGATCTGCAT 7817435 >seq71820 Length=8892586 Score = 120 bits (132), Expect = 6e-22 Identities = 161/219 (74%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 |||| |||| |||| ||| || | |||||||||||||| ||| || || |||||| || Sbjct 106111 GAAGTCGCAGCACCAGGTGCAGGG-GGACTCTTTTTGGAGGTTGTAGTCAGAGAGT--CC 106055 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 ||||| || || || || | | | ||||| | || ||||| || ||| |||| | Sbjct 106054 AGCCATCCTCCAATTGTTTGCTGACAAATATCAAATGCTGCTGGTCAGGGGGA-TGCCCT 105996 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 |||||| ||| || || || |||||| |||||||||||| | || || | |||| Sbjct 105995 CCTTGTGTTGGATTTTGGCTTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTTGAAGG 105936 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460 |||||| | | ||||| |||||||| | ||| ||||||| Sbjct 105935 TGATGG-TCTGCCCGTCAGGGTCTTCATGAAGATCTGCA 105898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920761489475600