Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq74017 129 1e-24 seq71464 91.5 3e-13 >seq74017 Length=2439271 Score = 129 bits (142), Expect = 1e-24 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || |||||| |||| |||||| | || || || ||| | ||||||||||| |||||||| Sbjct 43784 GGGGAGAGGGTGGTGGCCTTTGCGGCTGTGGAAGGCGTGTTCTTCTCGGGGTCCTTCGCC 43725 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 ||||||||||||| ||| ||| || ||||| || ||||||||||| ||||| ||| Sbjct 43724 GCCATCTTCTGGCTGAAGAAGAGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTC 43665 Query 42816 ATCAGCAGGGACGAGG 42831 |||||||| ||||||| Sbjct 43664 ATCAGCAGAGACGAGG 43649 Score = 91.5 bits (100), Expect = 3e-13 Identities = 82/102 (80%), Gaps = 6/102 (6%) Strand=Plus/Minus Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 ||||||||| | |||||| ||||||||||||||||||||||| ||| ||||||||| Sbjct 45852 GAGGTGCAGGTCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCCTCATCGAGAACGTG 45793 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATC 42584 ||||| ||| ||||| | |||||| ||||||||||| Sbjct 45792 CACTCCGAGATGTACAGCT---TGCTCATAGACACGTACATC 45754 >seq71464 Length=6720225 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | ||||| || || |||||||| || || | || || ||||| |||| Sbjct 4556777 TGGTCGCCTTTGCGGCCGTGGAAGGGATCTTCTTTTCCGGTTCTTTTGCGTCCATTTTCT 4556718 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| | | || | | |||||| || || ||||| || |||||||| || ||||| Sbjct 4556717 GGCTCAAG-AAACGGGGACTGATGCCTGGCCTTACCTTTTCCAACGAACTTATTAGCAGA 4556659 Query 42825 GACGAGG 42831 || |||| Sbjct 4556658 GATGAGG 4556652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943457069144800