Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq72916 104 2e-17 seq71171 89.7 5e-13 seq70448 86.0 6e-12 >seq72916 Length=12258079 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| ||| | || ||||| || || || ||||| ||| || ||||| ||| || Sbjct 7817872 CACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCTTC 7817813 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || ||||| |||||| | |||||| || ||||| |||||||||||||| Sbjct 7817812 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTG 7817753 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | |||| |||||| | || || |||| ||| | || || Sbjct 7817752 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTT 7817693 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || || || || || |||||||| Sbjct 7817692 GCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817663 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || ||||| ||| || ||||| || ||| Sbjct 7817403 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCTTCCAGCTGCTTGCCA 7817344 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || ||||| |||||||||||||| ||| || |||| Sbjct 7817343 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 7817284 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | || || |||| ||| | || ||||| || || || Sbjct 7817283 ACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 7817224 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 7817223 TTCACGAAGATCTGCAT 7817207 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || ||||| || || ||||| || ||| Sbjct 7817631 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCA 7817572 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || ||||| |||||||||||||| ||| || |||| Sbjct 7817571 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 7817512 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | || || |||| ||| | || ||||| || || || Sbjct 7817511 ACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 7817452 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 7817451 TTCACGAAGATCTGCAT 7817435 >seq71171 Length=10874107 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| ||||||||||| || | ||||| |||||| ||||| || || Sbjct 9049392 GTAGACTCTTTCTGAATATTGTAGTCAGGAAGAGTGCGGCCATCGTCCAGCTGCTTGCCT 9049333 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||| || ||||| ||||| || || ||| ||| || ||| Sbjct 9049332 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 9049273 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | ||| || || | ||| | || ||||| ||||| || Sbjct 9049272 ACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 9049213 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 9049212 TTCACAAAGATCTGCAT 9049196 >seq70448 Length=578665 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| ||||||||||| || | ||||| ||| || ||||| || || Sbjct 511414 GTAGACTCTTTCTGAATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 511355 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||| || ||||| ||||| || || ||| ||| || ||| Sbjct 511354 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 511295 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | ||| || || | ||| | || ||||| ||||| || Sbjct 511294 ACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 511235 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 511234 TTCACAAAGATCTGCAT 511218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475056622815200